Strain Fitness in Pseudomonas putida KT2440 around PP_5065

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5064 and PP_5065 are separated by 42 nucleotidesPP_5065 and PP_5066 are separated by 122 nucleotides PP_5064: PP_5064 - choline dehydrogenase, at 5,775,684 to 5,777,381 _5064 PP_5065: PP_5065 - conserved protein of unknown function, at 5,777,424 to 5,779,574 _5065 PP_5066: PP_5066 - K(+)/H(+) antiporter NhaP2, at 5,779,697 to 5,781,490 _5066 Position (kb) 5777 5778 5779 5780Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.597 kb on - strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.774 kb on - strand, within PP_5064at 5776.797 kb on - strand, within PP_5064at 5776.800 kb on + strand, within PP_5064at 5776.800 kb on + strand, within PP_5064at 5776.801 kb on - strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.930 kb on - strand, within PP_5064at 5776.930 kb on - strand, within PP_5064at 5776.990 kb on + strand, within PP_5064at 5777.320 kb on - strandat 5777.322 kb on + strandat 5777.322 kb on + strandat 5777.322 kb on + strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.587 kb on + strandat 5777.629 kb on + strandat 5777.721 kb on + strand, within PP_5065at 5777.722 kb on - strand, within PP_5065at 5777.722 kb on - strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.803 kb on + strand, within PP_5065at 5777.804 kb on - strand, within PP_5065at 5777.804 kb on - strand, within PP_5065at 5777.917 kb on + strand, within PP_5065at 5777.933 kb on + strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5778.015 kb on - strand, within PP_5065at 5778.035 kb on - strand, within PP_5065at 5778.106 kb on + strand, within PP_5065at 5778.106 kb on + strand, within PP_5065at 5778.107 kb on - strand, within PP_5065at 5778.130 kb on + strand, within PP_5065at 5778.130 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.351 kb on + strand, within PP_5065at 5778.351 kb on + strand, within PP_5065at 5778.352 kb on - strand, within PP_5065at 5778.352 kb on - strand, within PP_5065at 5778.354 kb on - strand, within PP_5065at 5778.384 kb on + strand, within PP_5065at 5778.519 kb on + strand, within PP_5065at 5778.521 kb on + strand, within PP_5065at 5778.709 kb on + strand, within PP_5065at 5778.709 kb on + strand, within PP_5065at 5778.710 kb on - strand, within PP_5065at 5778.710 kb on - strand, within PP_5065at 5778.718 kb on - strand, within PP_5065at 5778.744 kb on + strand, within PP_5065at 5778.843 kb on + strand, within PP_5065at 5778.874 kb on + strand, within PP_5065at 5778.875 kb on - strand, within PP_5065at 5778.875 kb on - strand, within PP_5065at 5779.114 kb on + strand, within PP_5065at 5779.114 kb on + strand, within PP_5065at 5779.114 kb on + strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.115 kb on - strand, within PP_5065at 5779.197 kb on + strand, within PP_5065at 5779.198 kb on - strand, within PP_5065at 5779.198 kb on - strand, within PP_5065at 5779.198 kb on - strand, within PP_5065at 5779.237 kb on + strand, within PP_5065at 5779.265 kb on - strand, within PP_5065at 5779.265 kb on - strand, within PP_5065at 5779.265 kb on - strand, within PP_5065at 5779.276 kb on + strand, within PP_5065at 5779.276 kb on + strand, within PP_5065at 5779.277 kb on - strand, within PP_5065at 5779.430 kb on - strandat 5779.606 kb on + strandat 5779.606 kb on + strandat 5779.606 kb on + strandat 5779.607 kb on - strandat 5779.643 kb on + strandat 5779.644 kb on - strandat 5779.667 kb on - strandat 5779.691 kb on + strandat 5779.691 kb on + strandat 5779.691 kb on + strandat 5779.691 kb on + strandat 5779.692 kb on - strandat 5779.710 kb on + strandat 5779.740 kb on - strandat 5779.808 kb on - strandat 5779.808 kb on - strandat 5779.929 kb on - strand, within PP_5066at 5780.389 kb on + strand, within PP_5066at 5780.424 kb on + strand, within PP_5066at 5780.442 kb on + strand, within PP_5066at 5780.473 kb on + strand, within PP_5066at 5780.492 kb on + strand, within PP_5066

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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5,776,596 + PP_5064 0.54 -0.3
5,776,596 + PP_5064 0.54 -0.3
5,776,596 + PP_5064 0.54 -0.7
5,776,596 + PP_5064 0.54 -1.3
5,776,597 - PP_5064 0.54 +1.4
5,776,773 + PP_5064 0.64 -3.0
5,776,773 + PP_5064 0.64 -0.1
5,776,773 + PP_5064 0.64 +0.9
5,776,773 + PP_5064 0.64 -0.1
5,776,774 - PP_5064 0.64 +2.0
5,776,797 - PP_5064 0.66 +0.7
5,776,800 + PP_5064 0.66 +0.7
5,776,800 + PP_5064 0.66 -1.1
5,776,801 - PP_5064 0.66 -1.4
5,776,929 + PP_5064 0.73 +0.1
5,776,929 + PP_5064 0.73 -0.4
5,776,929 + PP_5064 0.73 -0.5
5,776,929 + PP_5064 0.73 -1.2
5,776,929 + PP_5064 0.73 -3.1
5,776,930 - PP_5064 0.73 +0.8
5,776,930 - PP_5064 0.73 -0.6
5,776,990 + PP_5064 0.77 +0.8
5,777,320 - -0.3
5,777,322 + +0.4
5,777,322 + -2.4
5,777,322 + +1.2
5,777,323 - +0.7
5,777,323 - +0.9
5,777,323 - -0.2
5,777,323 - +1.6
5,777,587 + -0.0
5,777,629 + +0.8
5,777,721 + PP_5065 0.14 +0.4
5,777,722 - PP_5065 0.14 +0.7
5,777,722 - PP_5065 0.14 +1.6
5,777,725 + PP_5065 0.14 -0.4
5,777,725 + PP_5065 0.14 +0.1
5,777,725 + PP_5065 0.14 -0.6
5,777,725 + PP_5065 0.14 +1.9
5,777,726 - PP_5065 0.14 +0.7
5,777,726 - PP_5065 0.14 +2.5
5,777,726 - PP_5065 0.14 +0.1
5,777,803 + PP_5065 0.18 -0.9
5,777,804 - PP_5065 0.18 +0.3
5,777,804 - PP_5065 0.18 +0.8
5,777,917 + PP_5065 0.23 +0.8
5,777,933 + PP_5065 0.24 +2.4
5,777,934 - PP_5065 0.24 +0.8
5,777,934 - PP_5065 0.24 -0.3
5,777,934 - PP_5065 0.24 -1.3
5,778,015 - PP_5065 0.27 +1.5
5,778,035 - PP_5065 0.28 +0.8
5,778,106 + PP_5065 0.32 -0.5
5,778,106 + PP_5065 0.32 -0.4
5,778,107 - PP_5065 0.32 -0.1
5,778,130 + PP_5065 0.33 -0.1
5,778,130 + PP_5065 0.33 +1.1
5,778,250 + PP_5065 0.38 +0.5
5,778,250 + PP_5065 0.38 +0.2
5,778,250 + PP_5065 0.38 +0.3
5,778,250 + PP_5065 0.38 -2.1
5,778,251 - PP_5065 0.38 +1.5
5,778,251 - PP_5065 0.38 +0.6
5,778,251 - PP_5065 0.38 +0.1
5,778,251 - PP_5065 0.38 +0.7
5,778,251 - PP_5065 0.38 -0.6
5,778,251 - PP_5065 0.38 +1.0
5,778,351 + PP_5065 0.43 +0.0
5,778,351 + PP_5065 0.43 -0.4
5,778,352 - PP_5065 0.43 +1.5
5,778,352 - PP_5065 0.43 +1.9
5,778,354 - PP_5065 0.43 -2.2
5,778,384 + PP_5065 0.45 -0.8
5,778,519 + PP_5065 0.51 +0.3
5,778,521 + PP_5065 0.51 +1.5
5,778,709 + PP_5065 0.60 +1.4
5,778,709 + PP_5065 0.60 -1.6
5,778,710 - PP_5065 0.60 +1.3
5,778,710 - PP_5065 0.60 +0.8
5,778,718 - PP_5065 0.60 +2.0
5,778,744 + PP_5065 0.61 -0.3
5,778,843 + PP_5065 0.66 +0.7
5,778,874 + PP_5065 0.67 +1.3
5,778,875 - PP_5065 0.67 +1.1
5,778,875 - PP_5065 0.67 +0.9
5,779,114 + PP_5065 0.79 -0.2
5,779,114 + PP_5065 0.79 +1.5
5,779,114 + PP_5065 0.79 +0.9
5,779,115 - PP_5065 0.79 -0.1
5,779,115 - PP_5065 0.79 +2.0
5,779,115 - PP_5065 0.79 +2.3
5,779,115 - PP_5065 0.79 -1.0
5,779,115 - PP_5065 0.79 -0.1
5,779,115 - PP_5065 0.79 +0.7
5,779,197 + PP_5065 0.82 +1.1
5,779,198 - PP_5065 0.82 -1.1
5,779,198 - PP_5065 0.82 +1.3
5,779,198 - PP_5065 0.82 -1.2
5,779,237 + PP_5065 0.84 +1.3
5,779,265 - PP_5065 0.86 +2.0
5,779,265 - PP_5065 0.86 +2.4
5,779,265 - PP_5065 0.86 +0.2
5,779,276 + PP_5065 0.86 -0.7
5,779,276 + PP_5065 0.86 -0.9
5,779,277 - PP_5065 0.86 -1.5
5,779,430 - -0.6
5,779,606 + +0.3
5,779,606 + +0.4
5,779,606 + +1.5
5,779,607 - +2.0
5,779,643 + +1.1
5,779,644 - +1.2
5,779,667 - -2.5
5,779,691 + +3.1
5,779,691 + +1.1
5,779,691 + +0.5
5,779,691 + -0.1
5,779,692 - +0.1
5,779,710 + +1.1
5,779,740 - -0.4
5,779,808 - +0.8
5,779,808 - +0.4
5,779,929 - PP_5066 0.13 -0.0
5,780,389 + PP_5066 0.39 -0.4
5,780,424 + PP_5066 0.41 -2.9
5,780,442 + PP_5066 0.42 -0.9
5,780,473 + PP_5066 0.43 +0.2
5,780,492 + PP_5066 0.44 +0.4

Or see this region's nucleotide sequence