Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4984 and PP_4985 are separated by 163 nucleotides PP_4985 and PP_4986 are separated by 0 nucleotides PP_4986 and PP_4987 are separated by 203 nucleotides PP_4987 and PP_4988 overlap by 8 nucleotides
PP_4984: PP_4984 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,678,375 to 5,679,781
_4984
PP_4985: PP_4985 - 16S rRNA m3U1498 methyltransferase, at 5,679,945 to 5,680,664
_4985
PP_4986: PP_4986 - Channel protein, hemolysin III family, at 5,680,665 to 5,681,282
_4986
PP_4987: PP_4987 - putative Chemotaxis protein, at 5,681,486 to 5,681,959
_4987
PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892
_4988
Position (kb) 5680
5681
5682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5679.741 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.928 kb on - strand at 5679.932 kb on - strand at 5680.021 kb on - strand, within PP_4985 at 5680.021 kb on - strand, within PP_4985 at 5680.021 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.257 kb on + strand, within PP_4985 at 5680.377 kb on - strand, within PP_4985 at 5680.377 kb on - strand, within PP_4985 at 5680.532 kb on + strand, within PP_4985 at 5680.533 kb on - strand, within PP_4985 at 5680.666 kb on + strand at 5680.667 kb on - strand at 5680.675 kb on + strand at 5680.789 kb on + strand, within PP_4986 at 5680.790 kb on - strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5681.026 kb on + strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.149 kb on + strand, within PP_4986 at 5681.223 kb on - strand at 5681.275 kb on + strand at 5681.276 kb on - strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.279 kb on - strand at 5681.279 kb on - strand at 5681.488 kb on - strand at 5681.617 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5682.007 kb on + strand at 5682.007 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,679,741 + +1.3 5,679,927 + +2.1 5,679,927 + +0.5 5,679,927 + +1.8 5,679,927 + +1.8 5,679,927 + +0.6 5,679,928 - -0.0 5,679,932 - -0.8 5,680,021 - PP_4985 0.11 +0.7 5,680,021 - PP_4985 0.11 +0.1 5,680,021 - PP_4985 0.11 -1.6 5,680,090 - PP_4985 0.20 -1.5 5,680,090 - PP_4985 0.20 -0.7 5,680,090 - PP_4985 0.20 -0.3 5,680,257 + PP_4985 0.43 -1.4 5,680,377 - PP_4985 0.60 +0.1 5,680,377 - PP_4985 0.60 +0.3 5,680,532 + PP_4985 0.82 +0.5 5,680,533 - PP_4985 0.82 -0.1 5,680,666 + +0.9 5,680,667 - -0.6 5,680,675 + +0.9 5,680,789 + PP_4986 0.20 +0.9 5,680,790 - PP_4986 0.20 +0.2 5,680,888 + PP_4986 0.36 -1.1 5,680,888 + PP_4986 0.36 +0.5 5,680,888 + PP_4986 0.36 +1.5 5,680,889 - PP_4986 0.36 +1.4 5,680,889 - PP_4986 0.36 +0.4 5,681,026 + PP_4986 0.58 +1.4 5,681,027 - PP_4986 0.59 +1.2 5,681,027 - PP_4986 0.59 +1.9 5,681,048 - PP_4986 0.62 +0.4 5,681,048 - PP_4986 0.62 -0.1 5,681,125 + PP_4986 0.74 +1.1 5,681,125 + PP_4986 0.74 +0.4 5,681,125 + PP_4986 0.74 +1.5 5,681,125 + PP_4986 0.74 +0.6 5,681,149 + PP_4986 0.78 +0.3 5,681,223 - -0.4 5,681,275 + -0.9 5,681,276 - +1.1 5,681,278 + -0.5 5,681,278 + +0.9 5,681,278 + -0.8 5,681,278 + +0.8 5,681,279 - -1.1 5,681,279 - +1.6 5,681,488 - -0.1 5,681,617 - PP_4987 0.28 -2.8 5,681,846 - PP_4987 0.76 -2.9 5,681,846 - PP_4987 0.76 -2.6 5,682,007 + -1.3 5,682,007 + -1.2 5,682,219 + -0.5 5,682,219 + -0.3 5,682,219 + +2.6 5,682,220 - -0.2 5,682,220 - +0.4 5,682,220 - +0.0 5,682,220 - -0.4
Or see this region's nucleotide sequence