Strain Fitness in Pseudomonas putida KT2440 around PP_4789

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4787 and PP_4788 overlap by 8 nucleotidesPP_4788 and PP_4789 are separated by 25 nucleotidesPP_4789 and PP_4790 are separated by 8 nucleotides PP_4787: PP_4787 - putative protein with nucleoside triphosphate hydrolase domain, at 5,449,132 to 5,450,130 _4787 PP_4788: PP_4788 - Endoribonuclease YbeY, at 5,450,123 to 5,450,596 _4788 PP_4789: PP_4789 - heat shock protein, Co2+ and Mg2+ efflux protein, at 5,450,622 to 5,451,461 _4789 PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987 _4790 Position (kb) 5450 5451 5452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5449.699 kb on + strand, within PP_4787at 5449.798 kb on + strand, within PP_4787at 5449.798 kb on + strand, within PP_4787at 5450.074 kb on + strandat 5450.561 kb on + strandat 5450.597 kb on + strandat 5450.598 kb on - strandat 5451.120 kb on + strand, within PP_4789at 5451.121 kb on - strand, within PP_4789at 5451.213 kb on + strand, within PP_4789at 5451.213 kb on + strand, within PP_4789at 5451.213 kb on + strand, within PP_4789at 5451.213 kb on + strand, within PP_4789at 5451.214 kb on - strandat 5451.214 kb on - strand, within PP_4789at 5451.214 kb on - strandat 5451.391 kb on - strandat 5451.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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5,449,699 + PP_4787 0.57 -1.2
5,449,798 + PP_4787 0.67 -1.1
5,449,798 + PP_4787 0.67 -0.3
5,450,074 + +0.3
5,450,561 + -0.8
5,450,597 + -0.1
5,450,598 - -4.6
5,451,120 + PP_4789 0.59 -2.7
5,451,121 - PP_4789 0.59 -3.6
5,451,213 + PP_4789 0.70 -0.9
5,451,213 + PP_4789 0.70 -1.9
5,451,213 + PP_4789 0.70 -2.1
5,451,213 + PP_4789 0.70 -0.7
5,451,214 - -0.1
5,451,214 - PP_4789 0.70 -0.5
5,451,214 - +0.0
5,451,391 - -2.4
5,451,428 - -3.1

Or see this region's nucleotide sequence