Strain Fitness in Pseudomonas putida KT2440 around PP_4663

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,288,651	+		PP_4661	0.22	-0.4
5,288,651	+		PP_4661	0.22	+1.2
5,288,652	-		PP_4661	0.22	-2.0
5,288,738	+		PP_4661	0.35	-0.6
5,288,738	+		PP_4661	0.35	-0.1
5,288,738	+		PP_4661	0.35	-0.5
5,288,738	+		PP_4661	0.35	+0.3
5,288,738	+		PP_4661	0.35	+0.5
5,288,739	-		PP_4661	0.35	+0.7
5,288,739	-		PP_4661	0.35	+1.5
5,288,739	-		PP_4661	0.35	+1.3
5,288,739	-				+1.6
5,288,739	-		PP_4661	0.35	+0.9
5,288,739	-		PP_4661	0.35	-0.7
5,288,772	-		PP_4661	0.40	-0.6
5,288,796	+		PP_4661	0.44	-0.6
5,288,813	+		PP_4661	0.46	-1.3
5,288,814	-		PP_4661	0.46	-2.0
5,288,814	-		PP_4661	0.46	-1.2
5,288,814	-		PP_4661	0.46	+0.5
5,288,853	-		PP_4661	0.52	+0.4
5,288,853	-		PP_4661	0.52	+1.7
5,288,853	-		PP_4661	0.52	+0.1
5,288,900	+		PP_4661	0.59	+0.3
5,288,900	+		PP_4661	0.59	-1.1
5,288,901	-		PP_4661	0.59	-0.9
5,288,901	-		PP_4661	0.59	+0.1
5,288,951	+		PP_4661	0.67	-0.6
5,288,952	-		PP_4661	0.67	+0.7
5,289,063	+		PP_4661	0.83	-0.5
5,289,136	-				+2.1
5,289,136	-				+0.4
5,289,156	+				+0.8
5,289,178	-				+2.0
5,289,208	-				+0.2
5,289,208	-				-0.0
5,289,248	+				+2.0
5,289,277	+				-2.0
5,289,278	-				+0.6
5,289,278	-				-0.6
5,289,278	-				-1.3
5,289,338	+		PP_4662	0.26	-0.3
5,289,339	-		PP_4662	0.26	+0.9
5,289,506	+		PP_4662	0.79	+1.4
5,289,507	-		PP_4662	0.79	+0.3
5,289,507	-		PP_4662	0.79	-0.6
5,289,507	-		PP_4662	0.79	-0.1
5,289,748	-		PP_4663	0.24	+3.0
5,289,774	-		PP_4663	0.28	-1.6
5,289,833	-		PP_4663	0.36	-0.1
5,289,930	+		PP_4663	0.48	+1.6
5,289,930	+		PP_4663	0.48	-1.2
5,289,931	-		PP_4663	0.48	-1.9
5,289,958	+		PP_4663	0.52	-0.4
5,289,958	+		PP_4663	0.52	-0.2
5,289,959	-		PP_4663	0.52	-1.3
5,289,959	-		PP_4663	0.52	-1.2
5,289,959	-		PP_4663	0.52	-3.0
5,289,968	-		PP_4663	0.53	-1.6
5,290,266	+				-0.8
5,290,266	+				-0.8
5,290,266	+				+0.7
5,290,266	+				+0.3
5,290,266	+				+1.0
5,290,303	+				+0.0
5,290,304	-				-0.0
5,290,304	-				-0.4
5,290,368	+				-0.3
5,290,368	+				-0.2
5,290,369	-				+0.4
5,290,370	+				+0.8
5,290,370	+				+0.1
5,290,371	-				+0.6
5,290,573	-		PP_4664	0.19	-1.4
5,290,621	-		PP_4664	0.25	-3.2
5,290,721	+		PP_4664	0.36	+1.8
5,290,722	-		PP_4664	0.36	+0.8
5,290,745	+		PP_4664	0.39	+1.2
5,290,745	+		PP_4664	0.39	-0.8
5,290,745	+		PP_4664	0.39	+0.0
5,290,745	+		PP_4664	0.39	+0.2
5,290,746	-		PP_4664	0.39	-0.8
5,290,746	-		PP_4664	0.39	+1.1
5,290,746	-		PP_4664	0.39	+0.8
5,290,816	+		PP_4664	0.47	-0.1
5,290,816	+		PP_4664	0.47	+0.1
5,290,816	+		PP_4664	0.47	-0.8
5,290,979	+		PP_4664	0.65	+0.3
5,290,979	+		PP_4664	0.65	+1.5
5,290,979	+		PP_4664	0.65	-1.6
5,290,980	-		PP_4664	0.65	+0.5
5,291,015	+		PP_4664	0.69	+1.2
5,291,250	-				+0.7