Strain Fitness in Pseudomonas putida KT2440 around PP_4618

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4617 and PP_4618 are separated by 124 nucleotidesPP_4618 and PP_4619 overlap by 7 nucleotidesPP_4619 and PP_4620 are separated by 12 nucleotides PP_4617: PP_4617 - leucine dehydrogenase, at 5,239,295 to 5,240,314 _4617 PP_4618: PP_4618 - conserved protein of unknown function, at 5,240,439 to 5,241,245 _4618 PP_4619: PP_4619 - Maleylacetoacetate isomerase, at 5,241,239 to 5,241,871 _4619 PP_4620: PP_4620 - Fumarylacetoacetase, at 5,241,884 to 5,243,176 _4620 Position (kb) 5240 5241 5242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.482 kb on + strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.530 kb on + strand, within PP_4617at 5239.637 kb on - strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.860 kb on - strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.347 kb on + strandat 5240.347 kb on + strandat 5240.347 kb on + strandat 5240.348 kb on - strandat 5240.348 kb on - strandat 5240.349 kb on + strandat 5240.349 kb on + strandat 5240.349 kb on + strandat 5240.350 kb on - strandat 5240.350 kb on - strandat 5240.350 kb on - strandat 5240.410 kb on + strandat 5240.411 kb on - strandat 5240.411 kb on - strandat 5240.411 kb on - strandat 5240.414 kb on - strandat 5240.433 kb on + strandat 5240.584 kb on + strand, within PP_4618at 5240.585 kb on - strand, within PP_4618at 5240.611 kb on + strand, within PP_4618at 5240.611 kb on + strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.674 kb on - strandat 5240.674 kb on - strand, within PP_4618at 5240.713 kb on + strand, within PP_4618at 5240.714 kb on - strand, within PP_4618at 5240.786 kb on - strand, within PP_4618at 5240.786 kb on - strand, within PP_4618at 5241.015 kb on - strand, within PP_4618at 5241.087 kb on + strand, within PP_4618at 5241.109 kb on - strand, within PP_4618at 5241.387 kb on + strand, within PP_4619at 5241.388 kb on - strandat 5241.388 kb on - strand, within PP_4619at 5241.388 kb on - strand, within PP_4619at 5241.642 kb on + strand, within PP_4619at 5241.657 kb on + strand, within PP_4619at 5241.741 kb on - strand, within PP_4619at 5241.741 kb on - strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.796 kb on - strand, within PP_4619at 5241.852 kb on + strandat 5241.853 kb on - strandat 5241.853 kb on - strandat 5241.855 kb on + strandat 5241.855 kb on + strandat 5241.855 kb on + strandat 5241.856 kb on - strandat 5241.856 kb on - strandat 5241.856 kb on - strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.871 kb on + strandat 5241.872 kb on - strandat 5242.170 kb on + strand, within PP_4620at 5242.170 kb on + strand, within PP_4620at 5242.170 kb on + strand, within PP_4620at 5242.171 kb on - strand, within PP_4620at 5242.171 kb on - strand, within PP_4620

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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5,239,455 + PP_4617 0.16 +0.6
5,239,455 + PP_4617 0.16 -1.1
5,239,455 + PP_4617 0.16 -1.0
5,239,455 + PP_4617 0.16 -0.6
5,239,455 + PP_4617 0.16 -1.4
5,239,456 - PP_4617 0.16 +0.7
5,239,456 - PP_4617 0.16 -0.8
5,239,456 - PP_4617 0.16 +0.3
5,239,456 - PP_4617 0.16 +0.6
5,239,456 - PP_4617 0.16 +0.3
5,239,482 + PP_4617 0.18 -0.4
5,239,483 - PP_4617 0.18 +1.5
5,239,483 - PP_4617 0.18 -2.2
5,239,494 + PP_4617 0.20 +0.9
5,239,494 + PP_4617 0.20 +1.0
5,239,494 + PP_4617 0.20 +1.6
5,239,494 + PP_4617 0.20 -0.4
5,239,494 + PP_4617 0.20 +1.6
5,239,494 + PP_4617 0.20 +0.2
5,239,494 + PP_4617 0.20 -0.0
5,239,494 + PP_4617 0.20 -0.1
5,239,494 + PP_4617 0.20 +0.2
5,239,494 + PP_4617 0.20 +1.2
5,239,495 - PP_4617 0.20 +0.7
5,239,495 - PP_4617 0.20 +0.7
5,239,495 - PP_4617 0.20 -0.3
5,239,495 - PP_4617 0.20 -0.5
5,239,495 - PP_4617 0.20 -0.3
5,239,495 - PP_4617 0.20 -1.2
5,239,499 + PP_4617 0.20 -0.2
5,239,499 + PP_4617 0.20 +0.8
5,239,499 + PP_4617 0.20 +0.9
5,239,499 + PP_4617 0.20 -1.0
5,239,499 + PP_4617 0.20 +1.3
5,239,500 - PP_4617 0.20 +0.2
5,239,500 - PP_4617 0.20 +1.1
5,239,500 - PP_4617 0.20 +0.8
5,239,530 + PP_4617 0.23 +0.7
5,239,637 - PP_4617 0.34 -0.4
5,239,859 + PP_4617 0.55 -1.8
5,239,859 + PP_4617 0.55 +0.3
5,239,859 + PP_4617 0.55 +1.9
5,239,859 + PP_4617 0.55 +4.5
5,239,860 - PP_4617 0.55 -0.1
5,239,926 + PP_4617 0.62 +0.4
5,239,926 + PP_4617 0.62 +0.2
5,240,121 + PP_4617 0.81 +0.8
5,240,121 + PP_4617 0.81 -0.7
5,240,121 + PP_4617 0.81 -1.3
5,240,121 + PP_4617 0.81 -0.7
5,240,121 + PP_4617 0.81 -0.2
5,240,121 + PP_4617 0.81 +0.7
5,240,121 + PP_4617 0.81 -0.1
5,240,122 - PP_4617 0.81 +2.5
5,240,122 - PP_4617 0.81 -2.2
5,240,122 - PP_4617 0.81 +0.5
5,240,347 + +1.5
5,240,347 + -0.7
5,240,347 + -0.6
5,240,348 - -0.2
5,240,348 - -0.2
5,240,349 + -2.2
5,240,349 + +1.3
5,240,349 + +0.4
5,240,350 - -0.9
5,240,350 - +0.5
5,240,350 - -1.6
5,240,410 + -0.8
5,240,411 - -0.6
5,240,411 - -2.5
5,240,411 - -0.2
5,240,414 - +1.0
5,240,433 + +1.2
5,240,584 + PP_4618 0.18 +1.7
5,240,585 - PP_4618 0.18 -2.0
5,240,611 + PP_4618 0.21 +0.1
5,240,611 + PP_4618 0.21 +0.8
5,240,612 - PP_4618 0.21 +0.0
5,240,612 - PP_4618 0.21 +0.9
5,240,612 - PP_4618 0.21 -0.1
5,240,673 + PP_4618 0.29 +1.5
5,240,673 + PP_4618 0.29 +0.8
5,240,673 + PP_4618 0.29 +0.7
5,240,673 + PP_4618 0.29 +1.1
5,240,674 - +2.0
5,240,674 - PP_4618 0.29 -0.0
5,240,713 + PP_4618 0.34 +0.2
5,240,714 - PP_4618 0.34 +0.2
5,240,786 - PP_4618 0.43 -1.6
5,240,786 - PP_4618 0.43 +1.0
5,241,015 - PP_4618 0.71 +1.6
5,241,087 + PP_4618 0.80 +1.1
5,241,109 - PP_4618 0.83 +1.8
5,241,387 + PP_4619 0.23 +0.1
5,241,388 - -0.6
5,241,388 - PP_4619 0.24 +2.0
5,241,388 - PP_4619 0.24 +1.8
5,241,642 + PP_4619 0.64 -0.9
5,241,657 + PP_4619 0.66 -1.3
5,241,741 - PP_4619 0.79 -0.4
5,241,741 - PP_4619 0.79 -1.0
5,241,744 + PP_4619 0.80 +0.1
5,241,744 + PP_4619 0.80 -1.7
5,241,744 + PP_4619 0.80 +0.7
5,241,744 + PP_4619 0.80 -2.1
5,241,744 + PP_4619 0.80 -1.3
5,241,745 - PP_4619 0.80 -3.8
5,241,745 - PP_4619 0.80 +0.5
5,241,745 - PP_4619 0.80 -0.3
5,241,796 - PP_4619 0.88 +0.3
5,241,852 + -0.9
5,241,853 - +0.2
5,241,853 - +0.5
5,241,855 + +2.0
5,241,855 + +1.2
5,241,855 + -0.7
5,241,856 - +2.7
5,241,856 - +0.4
5,241,856 - -0.2
5,241,861 + -0.2
5,241,861 + +2.2
5,241,861 + +1.2
5,241,861 + -0.5
5,241,861 + +1.5
5,241,861 + -1.6
5,241,862 - +0.7
5,241,862 - +1.5
5,241,862 - -0.8
5,241,862 - -0.8
5,241,862 - -1.1
5,241,871 + -1.5
5,241,872 - -0.6
5,242,170 + PP_4620 0.22 +0.2
5,242,170 + PP_4620 0.22 -0.5
5,242,170 + PP_4620 0.22 +1.1
5,242,171 - PP_4620 0.22 -0.1
5,242,171 - PP_4620 0.22 -0.7

Or see this region's nucleotide sequence