Strain Fitness in Pseudomonas putida KT2440 around PP_4541

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,156,346	+		PP_4539	0.87	+1.5
5,156,346	+		PP_4539	0.87	+0.3
5,156,347	-		PP_4539	0.87	+0.3
5,156,347	-		PP_4539	0.87	+0.7
5,156,352	+		PP_4539	0.88	-0.1
5,156,353	-		PP_4539	0.88	-0.7
5,156,485	+				-0.7
5,156,486	-				-0.2
5,156,515	+				+0.8
5,156,516	-				+1.5
5,156,524	+				+1.4
5,156,524	+				+1.3
5,156,524	+				+1.2
5,156,525	-				+2.3
5,156,525	-				+1.5
5,156,525	-				+1.0
5,156,552	+				+0.7
5,156,553	-				+0.3
5,156,553	-				+1.7
5,156,675	-		PP_4540	0.24	-2.5
5,157,088	-		PP_4540	0.75	-0.8
5,157,088	-		PP_4540	0.75	-0.3
5,157,116	-		PP_4540	0.78	+0.8
5,157,116	-		PP_4540	0.78	+1.7
5,157,116	-		PP_4540	0.78	+2.1
5,157,126	-		PP_4540	0.80	+0.6
5,157,126	-		PP_4540	0.80	+0.7
5,157,143	-		PP_4540	0.82	-0.8
5,157,155	+		PP_4540	0.83	+1.1
5,157,155	+		PP_4540	0.83	+0.7
5,157,156	-		PP_4540	0.83	+0.4
5,157,156	-		PP_4540	0.83	+0.9
5,157,198	+		PP_4540	0.88	+1.2
5,157,198	+		PP_4540	0.88	+0.9
5,157,199	-		PP_4540	0.89	+0.5
5,157,199	-		PP_4540	0.89	+1.6
5,157,429	-		PP_4541	0.26	-0.1
5,157,447	+		PP_4541	0.29	-0.1
5,157,447	+		PP_4541	0.29	+1.1
5,157,448	-		PP_4541	0.29	+2.4
5,157,465	+		PP_4541	0.32	+1.3
5,157,466	-		PP_4541	0.32	+1.3
5,157,705	+		PP_4541	0.75	+2.1
5,157,706	-		PP_4541	0.75	+0.1
5,157,813	+				+0.6
5,157,813	+				+0.4
5,157,814	-				+1.2
5,157,814	-				-0.0
5,157,814	-				+1.2
5,157,814	-				+1.2
5,157,814	-				+0.8
5,157,815	+				-0.1
5,157,834	-				-0.3
5,157,990	-				+0.4
5,157,990	-				+0.2
5,157,996	-				-0.3
5,157,996	-				+0.8
5,157,998	+				+0.6
5,157,998	+				+0.1
5,157,998	+				+1.4
5,157,999	-				+0.4
5,158,082	+				-0.3
5,158,231	+		PP_4542	0.18	-1.7
5,158,231	+				+0.5
5,158,232	-		PP_4542	0.18	-2.0
5,158,273	+		PP_4542	0.20	-2.7
5,158,274	-		PP_4542	0.20	-1.0
5,158,274	-		PP_4542	0.20	+0.3
5,158,277	+		PP_4542	0.20	+1.2
5,158,277	+		PP_4542	0.20	+0.3
5,158,277	+		PP_4542	0.20	+0.3
5,158,277	+		PP_4542	0.20	-0.3
5,158,277	+		PP_4542	0.20	-0.6
5,158,277	+		PP_4542	0.20	+0.5
5,158,277	+		PP_4542	0.20	-0.6
5,158,277	+		PP_4542	0.20	+1.2
5,158,277	+		PP_4542	0.20	-0.1
5,158,277	+		PP_4542	0.20	-0.8
5,158,277	+				-1.5
5,158,277	+		PP_4542	0.20	+0.9
5,158,277	+		PP_4542	0.20	+0.2
5,158,277	+		PP_4542	0.20	-0.1
5,158,278	-		PP_4542	0.20	+0.0
5,158,278	-		PP_4542	0.20	-0.0
5,158,278	-		PP_4542	0.20	-0.8
5,158,278	-		PP_4542	0.20	-0.1
5,158,278	-		PP_4542	0.20	-0.9
5,158,278	-		PP_4542	0.20	-0.4
5,158,278	-		PP_4542	0.20	+0.6
5,158,278	-		PP_4542	0.20	+0.9
5,158,278	-		PP_4542	0.20	-0.2
5,158,278	-		PP_4542	0.20	+0.9
5,158,328	-		PP_4542	0.23	-1.1
5,158,328	-		PP_4542	0.23	-0.2
5,158,395	+		PP_4542	0.27	-0.6
5,158,413	-		PP_4542	0.28	-0.8
5,158,490	+		PP_4542	0.32	+1.9
5,158,490	+		PP_4542	0.32	+0.2
5,158,490	+		PP_4542	0.32	-1.3
5,158,491	-		PP_4542	0.32	+0.3
5,158,491	-		PP_4542	0.32	+0.5
5,158,491	-		PP_4542	0.32	+0.7
5,158,491	-		PP_4542	0.32	-0.9
5,158,509	-		PP_4542	0.33	+0.8
5,158,509	-		PP_4542	0.33	+0.5
5,158,509	-		PP_4542	0.33	+0.6
5,158,577	-		PP_4542	0.37	+1.4
5,158,589	+		PP_4542	0.37	+0.6
5,158,632	-		PP_4542	0.40	+1.0
5,158,643	+		PP_4542	0.40	-0.9
5,158,644	-				+0.9
5,158,644	-		PP_4542	0.40	-0.2