Strain Fitness in Pseudomonas putida KT2440 around PP_4480

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,089,001	+		PP_4479	0.19	-0.8
5,089,001	+		PP_4479	0.19	-0.8
5,089,005	+		PP_4479	0.19	-0.9
5,089,006	-		PP_4479	0.19	-1.0
5,089,096	+		PP_4479	0.28	+1.1
5,089,106	-		PP_4479	0.29	-2.7
5,089,106	-		PP_4479	0.29	-0.6
5,089,106	-		PP_4479	0.29	-0.3
5,089,204	+		PP_4479	0.38	+0.8
5,089,205	-		PP_4479	0.38	+0.0
5,089,205	-		PP_4479	0.38	+0.7
5,089,582	+		PP_4479	0.75	-1.0
5,089,666	+		PP_4479	0.83	-3.8
5,089,667	-		PP_4479	0.83	+0.2
5,089,667	-		PP_4479	0.83	-1.1
5,089,821	+				+0.1
5,089,841	+				+2.6
5,089,841	+				-3.1
5,089,841	+				-2.8
5,089,841	+				+0.3
5,089,842	-				+1.3
5,089,842	-				-1.0
5,089,842	-				-2.2
5,089,842	-				-0.2
5,089,842	-				+0.3
5,089,882	+				-2.6
5,090,188	+		PP_4480	0.27	-2.7
5,090,188	+		PP_4480	0.27	+0.1
5,090,188	+		PP_4480	0.27	-0.4
5,090,188	+		PP_4480	0.27	-2.6
5,090,188	+		PP_4480	0.27	-2.7
5,090,188	+		PP_4480	0.27	-2.7
5,090,189	-		PP_4480	0.27	-0.6
5,090,220	+		PP_4480	0.30	-1.5
5,090,220	+		PP_4480	0.30	-0.4
5,090,220	+		PP_4480	0.30	+0.1
5,090,221	-		PP_4480	0.30	-2.3
5,090,221	-		PP_4480	0.30	+0.7
5,090,221	-		PP_4480	0.30	-2.9
5,090,221	-		PP_4480	0.30	-1.6
5,090,250	+		PP_4480	0.33	-0.1
5,090,250	+		PP_4480	0.33	-2.6
5,090,250	+		PP_4480	0.33	-1.3
5,090,251	-		PP_4480	0.33	-2.7
5,090,251	-		PP_4480	0.33	-1.3
5,090,251	-		PP_4480	0.33	+1.8
5,090,296	+		PP_4480	0.37	+0.1
5,090,296	+		PP_4480	0.37	-3.2
5,090,296	+		PP_4480	0.37	-1.7
5,090,297	-		PP_4480	0.37	+0.4
5,090,297	-		PP_4480	0.37	-0.6
5,090,297	-		PP_4480	0.37	-1.0
5,090,297	-		PP_4480	0.37	-2.8
5,090,297	-		PP_4480	0.37	-1.5
5,090,297	-		PP_4480	0.37	-1.7
5,090,333	+		PP_4480	0.41	-2.5
5,090,334	-		PP_4480	0.41	-0.2
5,090,371	+		PP_4480	0.45	-0.1
5,090,372	-		PP_4480	0.45	-2.0
5,090,372	-		PP_4480	0.45	+1.1
5,090,372	-				+0.3
5,090,557	+		PP_4480	0.63	-2.1
5,090,557	+		PP_4480	0.63	-1.8
5,090,557	+		PP_4480	0.63	-0.2
5,090,558	-		PP_4480	0.63	+0.7
5,090,625	+		PP_4480	0.69	-2.6
5,090,626	-		PP_4480	0.70	-2.2
5,090,675	-		PP_4480	0.74	-1.3
5,090,955	+				+1.1
5,091,319	+		PP_4481	0.19	-1.2
5,091,320	-		PP_4481	0.19	-0.3
5,091,320	-		PP_4481	0.19	-1.7
5,091,365	+		PP_4481	0.23	+0.0
5,091,366	-		PP_4481	0.23	-1.3
5,091,366	-		PP_4481	0.23	-0.9
5,091,451	+		PP_4481	0.30	-0.9
5,091,451	+		PP_4481	0.30	-2.6
5,091,452	-		PP_4481	0.30	-0.5
5,091,452	-		PP_4481	0.30	-2.2
5,091,452	-		PP_4481	0.30	-1.2
5,091,452	-		PP_4481	0.30	-1.7
5,091,590	-		PP_4481	0.41	-2.4
5,091,590	-		PP_4481	0.41	-3.3
5,091,590	-		PP_4481	0.41	-3.1
5,091,590	-		PP_4481	0.41	-0.3
5,091,590	-		PP_4481	0.41	-2.0
5,091,787	+		PP_4481	0.58	-1.7
5,091,787	+		PP_4481	0.58	-3.3
5,091,788	-		PP_4481	0.58	-2.9
5,091,788	-		PP_4481	0.58	-2.1
5,091,788	-		PP_4481	0.58	-2.9
5,091,836	-		PP_4481	0.62	-0.7