Strain Fitness in Pseudomonas putida KT2440 around PP_4477

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,085,103	-		PP_4475	0.45	-2.6
5,085,103	-		PP_4475	0.45	-0.7
5,085,156	+		PP_4475	0.50	-2.8
5,085,156	+		PP_4475	0.50	-2.5
5,085,156	+		PP_4475	0.50	-0.8
5,085,157	-		PP_4475	0.50	-0.2
5,085,157	-		PP_4475	0.50	-1.8
5,085,157	-		PP_4475	0.50	-0.3
5,085,158	+		PP_4475	0.50	-2.4
5,085,159	-		PP_4475	0.50	-0.9
5,085,159	-		PP_4475	0.50	-0.3
5,085,164	+		PP_4475	0.51	-0.0
5,085,164	+		PP_4475	0.51	-0.9
5,085,164	+		PP_4475	0.51	-0.8
5,085,164	+		PP_4475	0.51	-1.8
5,085,165	-		PP_4475	0.51	+1.2
5,085,165	-		PP_4475	0.51	-0.9
5,085,165	-		PP_4475	0.51	-1.4
5,085,165	-		PP_4475	0.51	-3.0
5,085,205	-		PP_4475	0.55	-1.8
5,085,215	+		PP_4475	0.56	-2.0
5,085,215	+		PP_4475	0.56	-2.7
5,085,215	+		PP_4475	0.56	-2.3
5,085,216	-		PP_4475	0.56	+0.5
5,085,216	-		PP_4475	0.56	+1.3
5,085,657	+				+0.9
5,085,657	+				-2.0
5,085,657	+				-1.9
5,085,657	+				-1.3
5,085,657	+				-2.6
5,085,657	+				-1.1
5,085,657	+				-2.3
5,085,658	-				-1.0
5,085,658	-				-1.0
5,085,658	-				+0.8
5,085,658	-				-0.8
5,085,669	+				-0.5
5,085,670	-				-0.6
5,085,793	-		PP_4476	0.43	-0.8
5,085,960	-				-0.7
5,085,995	+				-1.6
5,086,042	-				-1.6
5,086,133	+		PP_4477	0.12	-0.3
5,086,133	+		PP_4477	0.12	-3.3
5,086,134	-		PP_4477	0.12	-1.3
5,086,134	-		PP_4477	0.12	-2.3
5,086,304	+		PP_4477	0.25	-1.0
5,086,397	+		PP_4477	0.31	-0.2
5,086,397	+		PP_4477	0.31	-0.3
5,086,397	+		PP_4477	0.31	-2.4
5,086,480	-		PP_4477	0.38	-2.7
5,086,480	-		PP_4477	0.38	+1.2
5,086,551	+		PP_4477	0.43	+0.1
5,086,552	-		PP_4477	0.43	-2.9
5,086,556	-		PP_4477	0.43	-1.7
5,086,616	+		PP_4477	0.48	-0.4
5,086,616	+		PP_4477	0.48	+0.1
5,086,617	-		PP_4477	0.48	-0.4
5,086,617	-		PP_4477	0.48	-2.6
5,086,617	-		PP_4477	0.48	-0.7
5,086,617	-		PP_4477	0.48	-2.4
5,086,692	-		PP_4477	0.53	-3.1
5,086,767	-		PP_4477	0.59	-0.4
5,086,851	-		PP_4477	0.65	-1.0
5,086,916	+		PP_4477	0.70	-1.7
5,087,068	-		PP_4477	0.81	-0.1
5,087,230	-				-1.1
5,087,255	+				-1.9
5,087,255	+				+2.6
5,087,270	+				-0.1
5,087,270	+				-1.6
5,087,270	+				-1.2
5,087,271	-				+2.2
5,087,271	-				-0.6
5,087,271	-				-1.4
5,087,280	+				-2.6
5,087,312	+				-1.6
5,087,313	-				-2.0
5,087,347	+				-0.4
5,087,348	-				+0.1
5,087,348	-				+0.2
5,087,348	-				+0.8
5,087,348	-				+0.4
5,087,349	+				+0.6
5,087,350	-				-0.6
5,087,416	+				-0.2
5,087,425	+				-1.4
5,087,426	-				-1.4
5,087,440	+				-1.1
5,087,441	-				-1.6
5,087,441	-				-3.3
5,087,441	-				-4.4
5,087,557	+		PP_4478	0.14	+0.7
5,087,586	+		PP_4478	0.16	-1.7
5,087,587	-		PP_4478	0.16	-3.0
5,087,587	-		PP_4478	0.16	+0.3
5,087,587	-		PP_4478	0.16	-3.2
5,087,606	-		PP_4478	0.18	-1.7
5,087,616	-		PP_4478	0.18	-1.1
5,088,017	+		PP_4478	0.46	-2.1
5,088,017	+		PP_4478	0.46	-0.4
5,088,019	+		PP_4478	0.46	-0.7
5,088,019	+		PP_4478	0.46	-0.9
5,088,020	-		PP_4478	0.46	-1.3
5,088,020	-		PP_4478	0.46	-1.4
5,088,020	-		PP_4478	0.46	-0.7
5,088,020	-		PP_4478	0.46	-1.6
5,088,020	-		PP_4478	0.46	-1.9
5,088,020	-		PP_4478	0.46	-1.4
5,088,020	-		PP_4478	0.46	-1.4
5,088,068	+		PP_4478	0.49	-1.0
5,088,069	-		PP_4478	0.49	-0.3
5,088,171	-		PP_4478	0.56	-1.2
5,088,269	+		PP_4478	0.63	+0.6
5,088,270	-		PP_4478	0.63	-0.8