Strain Fitness in Pseudomonas putida KT2440 around PP_4305

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,895,702	+		PP_4304	0.19	-0.1
4,895,759	+		PP_4304	0.26	+1.7
4,895,759	+		PP_4304	0.26	+0.4
4,895,759	+		PP_4304	0.26	-1.0
4,895,760	-		PP_4304	0.26	+0.6
4,895,760	-		PP_4304	0.26	+0.1
4,895,760	-		PP_4304	0.26	-1.5
4,895,760	-		PP_4304	0.26	+1.1
4,895,760	-		PP_4304	0.26	+1.3
4,895,760	-		PP_4304	0.26	+0.2
4,895,760	-		PP_4304	0.26	+0.2
4,895,774	+		PP_4304	0.28	-0.0
4,895,774	+		PP_4304	0.28	+0.3
4,895,775	-		PP_4304	0.28	-0.9
4,895,799	-		PP_4304	0.31	-0.6
4,895,813	+		PP_4304	0.32	-0.0
4,895,814	-		PP_4304	0.33	-0.7
4,895,861	+		PP_4304	0.38	-0.3
4,895,865	-		PP_4304	0.39	-0.5
4,895,865	-		PP_4304	0.39	+1.0
4,895,865	-		PP_4304	0.39	-0.3
4,895,865	-		PP_4304	0.39	-2.6
4,895,880	-		PP_4304	0.41	+0.1
4,895,926	-		PP_4304	0.46	-0.3
4,895,926	-		PP_4304	0.46	+0.3
4,895,961	-		PP_4304	0.50	-0.5
4,895,961	-		PP_4304	0.50	-0.8
4,896,053	+		PP_4304	0.62	-1.8
4,896,054	-		PP_4304	0.62	+2.6
4,896,082	+		PP_4304	0.65	-1.1
4,896,104	+		PP_4304	0.68	+0.7
4,896,104	+		PP_4304	0.68	-0.1
4,896,104	+		PP_4304	0.68	-0.1
4,896,105	-		PP_4304	0.68	+0.7
4,896,105	-		PP_4304	0.68	+1.3
4,896,105	-		PP_4304	0.68	-0.1
4,896,203	+		PP_4304	0.80	+0.9
4,896,235	+		PP_4304	0.84	+1.1
4,896,369	-				+2.5
4,896,395	+				+0.9
4,896,407	+				+0.2
4,896,408	-				+1.0
4,896,408	-				+0.4
4,896,480	+				+1.8
4,896,510	+				-0.1
4,896,511	-				-1.1
4,896,511	-				+0.9
4,896,513	-				+0.2
4,896,513	-				+0.2
4,896,527	+				+0.5
4,896,646	+				-0.4
4,896,647	-				+1.9
4,896,666	-				-0.2
4,896,686	+		PP_4305	0.11	-0.6
4,896,686	+		PP_4305	0.11	+0.7
4,896,686	+		PP_4305	0.11	+0.4
4,896,687	-		PP_4305	0.11	+1.6
4,896,687	-		PP_4305	0.11	-0.1
4,896,695	+		PP_4305	0.12	+2.2
4,896,695	+		PP_4305	0.12	+1.0
4,896,695	+		PP_4305	0.12	+0.2
4,896,695	+		PP_4305	0.12	+1.1
4,896,696	-		PP_4305	0.12	+1.7
4,897,043	+		PP_4305	0.47	-1.1
4,897,043	+		PP_4305	0.47	+0.7
4,897,044	-		PP_4305	0.47	+0.6
4,897,044	-		PP_4305	0.47	+1.3
4,897,045	+		PP_4305	0.47	+0.6
4,897,045	+		PP_4305	0.47	+1.1
4,897,045	+		PP_4305	0.47	+1.6
4,897,045	+		PP_4305	0.47	+0.9
4,897,045	+		PP_4305	0.47	+1.4
4,897,045	+		PP_4305	0.47	+0.3
4,897,045	+		PP_4305	0.47	+1.6
4,897,045	+		PP_4305	0.47	+1.5
4,897,045	+		PP_4305	0.47	-0.3
4,897,045	+		PP_4305	0.47	+1.2
4,897,046	-		PP_4305	0.47	+1.9
4,897,046	-		PP_4305	0.47	+1.2
4,897,046	-		PP_4305	0.47	-0.3
4,897,046	-		PP_4305	0.47	+0.1
4,897,049	+		PP_4305	0.47	+0.2
4,897,049	+		PP_4305	0.47	+0.3
4,897,050	-		PP_4305	0.48	+0.9
4,897,050	-		PP_4305	0.48	+1.7
4,897,068	-		PP_4305	0.49	+0.1
4,897,071	+		PP_4305	0.50	-1.2
4,897,071	+		PP_4305	0.50	+0.1
4,897,071	+		PP_4305	0.50	-2.1
4,897,071	+		PP_4305	0.50	-0.8
4,897,072	-		PP_4305	0.50	+0.9
4,897,072	-		PP_4305	0.50	-0.6
4,897,281	+		PP_4305	0.71	+0.2
4,897,282	-		PP_4305	0.71	+0.6
4,897,323	+		PP_4305	0.75	-0.9
4,897,323	+		PP_4305	0.75	-2.4
4,897,324	-		PP_4305	0.75	+1.6
4,897,362	-		PP_4305	0.79	+0.3
4,897,362	-		PP_4305	0.79	+0.3
4,897,370	+		PP_4305	0.80	-0.0
4,897,370	+		PP_4305	0.80	+0.0
4,897,371	-		PP_4305	0.80	-0.1
4,897,371	-		PP_4305	0.80	-2.2
4,897,412	+		PP_4305	0.84	-0.6
4,897,412	+		PP_4305	0.84	+1.0
4,897,449	-		PP_4305	0.87	-0.7
4,897,510	+				+3.1
4,897,559	+				+1.2
4,897,559	+				+1.7
4,897,559	+				+2.4
4,897,559	+				-2.1
4,897,559	+				+1.9
4,897,560	-				-1.1
4,897,560	-				+0.8
4,897,560	-				-0.9
4,897,560	-				+2.0
4,897,560	-				+0.1
4,897,673	-				-0.3
4,897,673	-				+0.3
4,897,673	-				+0.6
4,897,673	-				-1.0
4,897,805	-		PP_4306	0.23	-1.9
4,897,868	-		PP_4306	0.29	+0.1
4,897,868	-		PP_4306	0.29	-0.0
4,897,876	+		PP_4306	0.30	-0.6
4,897,877	-		PP_4306	0.30	+0.6
4,897,921	+		PP_4306	0.35	-0.6
4,898,054	+		PP_4306	0.49	-0.4
4,898,054	+		PP_4306	0.49	-0.1
4,898,055	-		PP_4306	0.49	+0.0
4,898,055	-		PP_4306	0.49	+0.1
4,898,055	-		PP_4306	0.49	+1.1
4,898,055	-		PP_4306	0.49	+0.7
4,898,170	+		PP_4306	0.61	-0.2
4,898,170	+		PP_4306	0.61	-2.3
4,898,248	+		PP_4306	0.69	+1.3
4,898,546	+				-1.4
4,898,547	-				-0.8