Strain Fitness in Pseudomonas putida KT2440 around PP_4143

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,679,485	-				-0.3
4,679,502	-				-1.1
4,679,948	-				+1.1
4,679,959	-				+0.2
4,680,111	+		PP_4143	0.17	-0.7
4,680,112	-		PP_4143	0.17	-1.7
4,680,204	+		PP_4143	0.29	-1.6
4,680,535	+		PP_4143	0.70	-2.6
4,680,535	+		PP_4143	0.70	-2.4
4,680,536	-		PP_4143	0.70	-2.9
4,680,536	-		PP_4143	0.70	-4.0
4,680,594	+		PP_4143	0.78	-3.9
4,680,788	-				+1.0
4,680,788	-				+2.4
4,680,788	-				+0.5
4,680,835	+				-0.7
4,680,835	+				+1.4
4,680,835	+				+0.5
4,680,835	+				-0.2
4,680,835	+				-1.2
4,680,836	-				-0.7
4,680,870	+				+0.2
4,680,870	+				-0.9
4,680,891	-				-0.2
4,681,178	+		PP_4144	0.44	+1.7
4,681,332	+		PP_4144	0.64	-0.4
4,681,347	+		PP_4144	0.66	-0.0
4,681,347	+		PP_4144	0.66	-0.7
4,681,347	+		PP_4144	0.66	+0.6
4,681,347	+		PP_4144	0.66	+0.9
4,681,347	+		PP_4144	0.66	-1.4
4,681,347	+		PP_4144	0.66	-2.9
4,681,348	-		PP_4144	0.66	-1.5
4,681,348	-		PP_4144	0.66	+0.8
4,681,516	+		PP_4144	0.88	+0.5
4,681,516	+		PP_4144	0.88	+1.0
4,681,516	+		PP_4144	0.88	+0.3
4,681,611	+				+1.1
4,681,623	-				-2.3
4,681,624	+				-0.4
4,681,624	+				-1.2
4,681,625	-				-0.0
4,681,625	-				+1.0
4,681,625	-				-0.0
4,681,696	+				+0.5
4,681,702	+				+0.2
4,681,702	+				+0.3
4,681,702	+				+0.5
4,681,702	+				-1.6
4,681,703	-				-2.5
4,681,703	-				+0.2