Strain Fitness in Pseudomonas putida KT2440 around PP_3953

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3951 and PP_3952 are separated by 8 nucleotidesPP_3952 and PP_3953 are separated by 267 nucleotidesPP_3953 and PP_3954 are separated by 104 nucleotides PP_3951: PP_3951 - 3-oxoadipate CoA-transferase subunit A, at 4,457,363 to 4,458,058 _3951 PP_3952: PP_3952 - 3-oxoadipate CoA-transferase subunit A, at 4,458,067 to 4,458,708 _3952 PP_3953: PP_3953 - potassium transporter, at 4,458,976 to 4,460,430 _3953 PP_3954: PP_3954 - periplasmic binding subunit of unknown solute, at 4,460,535 to 4,461,485 _3954 Position (kb) 4458 4459 4460 4461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4457.993 kb on - strandat 4458.139 kb on + strand, within PP_3952at 4458.139 kb on + strand, within PP_3952at 4458.140 kb on - strand, within PP_3952at 4458.140 kb on - strand, within PP_3952at 4458.140 kb on - strand, within PP_3952at 4458.143 kb on + strand, within PP_3952at 4458.144 kb on - strand, within PP_3952at 4458.144 kb on - strand, within PP_3952at 4458.144 kb on - strand, within PP_3952at 4458.182 kb on - strand, within PP_3952at 4458.182 kb on - strand, within PP_3952at 4458.378 kb on - strand, within PP_3952at 4458.455 kb on + strand, within PP_3952at 4458.456 kb on - strand, within PP_3952at 4458.557 kb on - strand, within PP_3952at 4458.592 kb on + strand, within PP_3952at 4458.593 kb on - strand, within PP_3952at 4458.593 kb on - strand, within PP_3952at 4458.593 kb on - strand, within PP_3952at 4458.609 kb on - strand, within PP_3952at 4458.721 kb on + strandat 4458.721 kb on + strandat 4458.753 kb on + strandat 4458.753 kb on + strandat 4458.753 kb on + strandat 4458.754 kb on - strandat 4458.754 kb on - strandat 4458.754 kb on - strandat 4458.801 kb on - strandat 4458.801 kb on - strandat 4458.806 kb on + strandat 4458.907 kb on - strandat 4458.944 kb on + strandat 4458.945 kb on - strandat 4459.011 kb on + strandat 4459.012 kb on - strandat 4459.012 kb on - strandat 4459.019 kb on + strandat 4459.019 kb on + strandat 4459.075 kb on + strandat 4459.075 kb on + strandat 4459.076 kb on - strandat 4459.076 kb on - strandat 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strandat 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strand, within PP_3953at 4459.195 kb on + strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.196 kb on - strand, within PP_3953at 4459.368 kb on - strand, within PP_3953at 4459.368 kb on - strand, within PP_3953at 4459.407 kb on + strand, within PP_3953at 4459.527 kb on - strand, within PP_3953at 4459.541 kb on - strand, within PP_3953at 4459.541 kb on - strand, within PP_3953at 4459.647 kb on + strand, within PP_3953at 4459.648 kb on - strand, within PP_3953at 4459.715 kb on + strand, within PP_3953at 4459.715 kb on + strand, within PP_3953at 4459.741 kb on + strand, within PP_3953at 4459.741 kb on + strand, within PP_3953at 4459.741 kb on + strand, within PP_3953at 4459.741 kb on + strand, within PP_3953at 4459.742 kb on - strand, within PP_3953at 4459.742 kb on - strand, within PP_3953at 4459.742 kb on - strand, within PP_3953at 4459.742 kb on - strand, within PP_3953at 4459.742 kb on - strand, within PP_3953at 4459.888 kb on - strand, within PP_3953at 4459.913 kb on + strand, within PP_3953at 4459.914 kb on - strand, within PP_3953at 4459.916 kb on + strand, within PP_3953at 4459.945 kb on + strand, within PP_3953at 4459.946 kb on - strand, within PP_3953at 4459.946 kb on - strand, within PP_3953at 4460.036 kb on + strand, within PP_3953at 4460.119 kb on + strand, within PP_3953at 4460.119 kb on + strand, within PP_3953at 4460.119 kb on + strand, within PP_3953at 4460.119 kb on + strand, within PP_3953at 4460.120 kb on - strand, within PP_3953at 4460.150 kb on + strand, within PP_3953at 4460.150 kb on + strand, within PP_3953at 4460.150 kb on + strand, within PP_3953at 4460.150 kb on + strand, within PP_3953at 4460.151 kb on - strand, within PP_3953at 4460.222 kb on + strand, within PP_3953at 4460.393 kb on + strandat 4460.393 kb on + strandat 4460.400 kb on - strandat 4460.479 kb on + strandat 4460.479 kb on + strandat 4460.479 kb on + strandat 4460.480 kb on - strandat 4460.480 kb on - strandat 4460.494 kb on + strandat 4460.508 kb on + strandat 4460.634 kb on - strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.650 kb on - strand, within PP_3954at 4460.662 kb on + strand, within PP_3954at 4460.662 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.680 kb on - strand, within PP_3954at 4460.680 kb on - strand, within PP_3954at 4460.692 kb on + strand, within PP_3954at 4460.692 kb on + strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.870 kb on + strand, within PP_3954at 4460.883 kb on + strand, within PP_3954at 4460.949 kb on - strandat 4460.949 kb on - strand, within PP_3954at 4461.018 kb on - strand, within PP_3954at 4461.045 kb on + strand, within PP_3954at 4461.161 kb on - strand, within PP_3954at 4461.174 kb on - strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.266 kb on - strand, within PP_3954at 4461.328 kb on - strand, within PP_3954at 4461.346 kb on + strand, within PP_3954at 4461.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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4,457,993 - +0.5
4,458,139 + PP_3952 0.11 +0.3
4,458,139 + PP_3952 0.11 -1.3
4,458,140 - PP_3952 0.11 +2.9
4,458,140 - PP_3952 0.11 +0.0
4,458,140 - PP_3952 0.11 +0.4
4,458,143 + PP_3952 0.12 +1.2
4,458,144 - PP_3952 0.12 +1.9
4,458,144 - PP_3952 0.12 +0.2
4,458,144 - PP_3952 0.12 -0.4
4,458,182 - PP_3952 0.18 +1.8
4,458,182 - PP_3952 0.18 +0.2
4,458,378 - PP_3952 0.48 -2.2
4,458,455 + PP_3952 0.60 -2.1
4,458,456 - PP_3952 0.61 -2.0
4,458,557 - PP_3952 0.76 -0.2
4,458,592 + PP_3952 0.82 +1.2
4,458,593 - PP_3952 0.82 -0.1
4,458,593 - PP_3952 0.82 +0.9
4,458,593 - PP_3952 0.82 +0.7
4,458,609 - PP_3952 0.84 +0.0
4,458,721 + -2.4
4,458,721 + -0.1
4,458,753 + -2.0
4,458,753 + -1.5
4,458,753 + +0.6
4,458,754 - -0.8
4,458,754 - +1.7
4,458,754 - +0.8
4,458,801 - +0.4
4,458,801 - -1.2
4,458,806 + -0.6
4,458,907 - -0.6
4,458,944 + -1.4
4,458,945 - -1.8
4,459,011 + -1.3
4,459,012 - -2.0
4,459,012 - +0.4
4,459,019 + -1.3
4,459,019 + +1.0
4,459,075 + +1.1
4,459,075 + +0.3
4,459,076 - +0.3
4,459,076 - +2.5
4,459,195 + PP_3953 0.15 +2.2
4,459,195 + PP_3953 0.15 +1.1
4,459,195 + +0.7
4,459,195 + PP_3953 0.15 +1.3
4,459,195 + PP_3953 0.15 +0.2
4,459,195 + PP_3953 0.15 +0.7
4,459,195 + PP_3953 0.15 +1.9
4,459,195 + PP_3953 0.15 +0.2
4,459,196 - PP_3953 0.15 +0.6
4,459,196 - PP_3953 0.15 -0.1
4,459,196 - PP_3953 0.15 -1.1
4,459,196 - PP_3953 0.15 -0.8
4,459,196 - PP_3953 0.15 +0.7
4,459,196 - PP_3953 0.15 +0.5
4,459,196 - PP_3953 0.15 +0.7
4,459,196 - PP_3953 0.15 +0.9
4,459,196 - PP_3953 0.15 +0.7
4,459,368 - PP_3953 0.27 +0.2
4,459,368 - PP_3953 0.27 +0.3
4,459,407 + PP_3953 0.30 +1.0
4,459,527 - PP_3953 0.38 +0.2
4,459,541 - PP_3953 0.39 +0.8
4,459,541 - PP_3953 0.39 +0.7
4,459,647 + PP_3953 0.46 -0.2
4,459,648 - PP_3953 0.46 +0.6
4,459,715 + PP_3953 0.51 +1.5
4,459,715 + PP_3953 0.51 -0.6
4,459,741 + PP_3953 0.53 +1.4
4,459,741 + PP_3953 0.53 -0.2
4,459,741 + PP_3953 0.53 +0.5
4,459,741 + PP_3953 0.53 +0.7
4,459,742 - PP_3953 0.53 -0.3
4,459,742 - PP_3953 0.53 +1.1
4,459,742 - PP_3953 0.53 +0.1
4,459,742 - PP_3953 0.53 +0.4
4,459,742 - PP_3953 0.53 +0.1
4,459,888 - PP_3953 0.63 -2.0
4,459,913 + PP_3953 0.64 +2.3
4,459,914 - PP_3953 0.64 +1.4
4,459,916 + PP_3953 0.65 -3.8
4,459,945 + PP_3953 0.67 -0.5
4,459,946 - PP_3953 0.67 -1.6
4,459,946 - PP_3953 0.67 +0.4
4,460,036 + PP_3953 0.73 +2.4
4,460,119 + PP_3953 0.79 +0.8
4,460,119 + PP_3953 0.79 -2.0
4,460,119 + PP_3953 0.79 +0.2
4,460,119 + PP_3953 0.79 -0.8
4,460,120 - PP_3953 0.79 +0.3
4,460,150 + PP_3953 0.81 -0.4
4,460,150 + PP_3953 0.81 -0.2
4,460,150 + PP_3953 0.81 +2.5
4,460,150 + PP_3953 0.81 -2.8
4,460,151 - PP_3953 0.81 +0.5
4,460,222 + PP_3953 0.86 -0.0
4,460,393 + -0.4
4,460,393 + +1.9
4,460,400 - +1.4
4,460,479 + -0.3
4,460,479 + -0.1
4,460,479 + -0.5
4,460,480 - +0.4
4,460,480 - +1.5
4,460,494 + -4.3
4,460,508 + -0.9
4,460,634 - PP_3954 0.10 -2.1
4,460,646 + PP_3954 0.12 +1.1
4,460,646 + PP_3954 0.12 +2.0
4,460,646 + PP_3954 0.12 -0.6
4,460,647 - PP_3954 0.12 +0.7
4,460,647 - PP_3954 0.12 +1.5
4,460,647 - PP_3954 0.12 +0.4
4,460,650 - PP_3954 0.12 +0.5
4,460,662 + PP_3954 0.13 +0.2
4,460,662 + PP_3954 0.13 -0.2
4,460,679 + PP_3954 0.15 -0.2
4,460,679 + PP_3954 0.15 -0.1
4,460,679 + PP_3954 0.15 +2.0
4,460,680 - PP_3954 0.15 -1.1
4,460,680 - PP_3954 0.15 -0.4
4,460,692 + PP_3954 0.17 +0.5
4,460,692 + PP_3954 0.17 -0.8
4,460,693 - PP_3954 0.17 +0.2
4,460,693 - PP_3954 0.17 +1.5
4,460,693 - PP_3954 0.17 +1.2
4,460,870 + PP_3954 0.35 +0.2
4,460,883 + PP_3954 0.37 -1.1
4,460,949 - +0.3
4,460,949 - PP_3954 0.44 +0.7
4,461,018 - PP_3954 0.51 -1.0
4,461,045 + PP_3954 0.54 +0.6
4,461,161 - PP_3954 0.66 +0.4
4,461,174 - PP_3954 0.67 +0.3
4,461,243 + PP_3954 0.74 -1.1
4,461,243 + PP_3954 0.74 -1.5
4,461,243 + PP_3954 0.74 +0.5
4,461,243 + PP_3954 0.74 -0.1
4,461,243 + PP_3954 0.74 -3.1
4,461,244 - PP_3954 0.75 -1.4
4,461,244 - PP_3954 0.75 +1.5
4,461,244 - PP_3954 0.75 +0.9
4,461,244 - PP_3954 0.75 +0.5
4,461,244 - PP_3954 0.75 -1.0
4,461,244 - PP_3954 0.75 -0.7
4,461,244 - PP_3954 0.75 +1.5
4,461,244 - PP_3954 0.75 -0.4
4,461,265 + PP_3954 0.77 +2.1
4,461,265 + PP_3954 0.77 -0.1
4,461,265 + PP_3954 0.77 -0.2
4,461,266 - PP_3954 0.77 -0.3
4,461,328 - PP_3954 0.83 -0.1
4,461,346 + PP_3954 0.85 +0.9
4,461,396 - -0.8

Or see this region's nucleotide sequence