Strain Fitness in Pseudomonas putida KT2440 around PP_3890

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,406,936	+		PP_3889	0.30	+0.5
4,406,937	-		PP_3889	0.30	-0.6
4,406,948	+		PP_3889	0.31	+1.0
4,406,948	+		PP_3889	0.31	-0.3
4,407,359	+		PP_3889	0.63	-0.1
4,407,402	+		PP_3889	0.66	-2.3
4,407,402	+		PP_3889	0.66	-0.8
4,407,402	+		PP_3889	0.66	+0.2
4,407,425	+		PP_3889	0.68	+0.5
4,407,425	+		PP_3889	0.68	-2.4
4,407,425	+		PP_3889	0.68	-2.5
4,407,426	-		PP_3889	0.68	+1.7
4,407,426	-		PP_3889	0.68	+0.2
4,407,445	+		PP_3889	0.69	+0.2
4,407,446	-		PP_3889	0.69	-2.1
4,407,492	+		PP_3889	0.73	-1.0
4,407,492	+		PP_3889	0.73	+1.0
4,407,492	+		PP_3889	0.73	-0.2
4,407,493	-		PP_3889	0.73	-0.9
4,407,493	-		PP_3889	0.73	+1.3
4,407,493	-		PP_3889	0.73	-1.1
4,407,536	+		PP_3889	0.76	+1.4
4,407,536	+		PP_3889	0.76	+1.0
4,407,536	+				+0.3
4,407,537	-		PP_3889	0.76	+0.2
4,407,740	+				+0.6
4,407,741	-				-0.8
4,407,871	+				+1.8
4,407,872	-				+0.9
4,407,872	-				+0.2
4,407,925	+		PP_3890	0.19	+0.0
4,407,926	-		PP_3890	0.19	-1.7
4,407,953	-		PP_3890	0.25	+2.5
4,407,953	-		PP_3890	0.25	-1.4
4,408,012	+		PP_3890	0.39	+0.4
4,408,012	+		PP_3890	0.39	+1.6
4,408,013	-		PP_3890	0.39	+0.0
4,408,013	-		PP_3890	0.39	+2.0
4,408,013	-		PP_3890	0.39	+1.3
4,408,013	-		PP_3890	0.39	+1.3
4,408,024	+		PP_3890	0.41	+1.5
4,408,024	+		PP_3890	0.41	+0.1
4,408,025	-		PP_3890	0.42	-0.0
4,408,135	+		PP_3890	0.66	+2.4
4,408,135	+		PP_3890	0.66	+1.7
4,408,136	-		PP_3890	0.67	+2.2
4,408,136	-		PP_3890	0.67	-0.8
4,408,147	+		PP_3890	0.69	-1.3
4,408,148	-		PP_3890	0.69	+0.1
4,408,148	-		PP_3890	0.69	-0.3
4,408,268	+				+2.6
4,408,269	-				+3.0
4,408,269	-				+0.2
4,408,303	+				+1.2
4,408,303	+				-0.4
4,408,303	+				-0.2
4,408,304	-				+0.5
4,408,423	+				-1.0
4,408,424	-				+0.6
4,408,429	+				+0.5
4,408,429	+				-1.1
4,408,430	-				-0.9
4,408,430	-				+1.8
4,408,519	+		PP_3891	0.29	-2.7
4,408,625	+		PP_3891	0.65	-0.0
4,408,625	+		PP_3891	0.65	-0.7
4,408,625	+		PP_3891	0.65	+0.1
4,408,888	+		PP_3892	0.86	+0.8