Strain Fitness in Pseudomonas putida KT2440 around PP_3464

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,927,556	-		PP_3463	0.49	+1.0
3,927,764	+		PP_3463	0.62	-1.8
3,927,764	+		PP_3463	0.62	+1.6
3,927,765	-		PP_3463	0.63	+1.6
3,927,765	-		PP_3463	0.63	-1.1
3,927,906	-		PP_3463	0.72	+0.1
3,927,972	-		PP_3463	0.76	-0.6
3,927,972	-		PP_3463	0.76	-1.1
3,928,024	-		PP_3463	0.80	-1.4
3,928,036	-		PP_3463	0.81	-1.8
3,928,126	+		PP_3463	0.87	+0.1
3,928,127	-		PP_3463	0.87	+0.0
3,928,238	+				+1.8
3,928,367	+				-1.4
3,928,367	+				-1.5
3,928,368	-				-1.2
3,928,376	+				+0.7
3,928,376	+				+0.4
3,928,390	+				+0.7
3,928,443	+				+1.1
3,928,443	+				+0.4
3,928,502	-				+1.5
3,928,525	-				+1.3
3,928,525	-				-0.7
3,928,525	-				-0.8
3,928,525	-				+0.9
3,928,534	-				-1.1
3,928,534	-				-1.3
3,928,534	-				-1.8
3,928,656	+		PP_3464	0.15	+0.8
3,928,660	+		PP_3464	0.15	+0.9
3,928,809	+		PP_3464	0.26	+0.9
3,928,810	-		PP_3464	0.26	+0.8
3,928,977	+		PP_3464	0.39	+0.0
3,928,980	+				+1.4
3,928,980	+		PP_3464	0.39	-0.2
3,928,980	+		PP_3464	0.39	+1.1
3,928,981	-		PP_3464	0.39	+2.3
3,928,981	-		PP_3464	0.39	+0.7
3,929,083	-		PP_3464	0.47	+1.1
3,929,382	+		PP_3464	0.70	+0.7
3,929,424	+		PP_3464	0.73	-0.0
3,929,424	+		PP_3464	0.73	+0.3
3,929,425	-		PP_3464	0.73	-0.5
3,929,425	-		PP_3464	0.73	+0.1
3,929,425	-		PP_3464	0.73	+1.1
3,929,478	+		PP_3464	0.77	-0.2
3,929,479	-		PP_3464	0.77	-0.7
3,929,519	-		PP_3464	0.80	+0.6
3,929,565	+		PP_3464	0.84	+0.1
3,929,565	+		PP_3464	0.84	-0.3
3,929,566	-		PP_3464	0.84	+1.3
3,929,628	+		PP_3464	0.89	+1.0
3,929,628	+		PP_3464	0.89	+0.9
3,929,628	+		PP_3464	0.89	+1.0
3,929,628	+		PP_3464	0.89	-0.3
3,929,629	-		PP_3464	0.89	-1.1
3,929,629	-		PP_3464	0.89	-2.9
3,929,629	-		PP_3464	0.89	+0.4
3,929,629	-		PP_3464	0.89	+1.7
3,929,682	+				-0.9
3,929,683	-				-0.3
3,929,715	-				+0.5
3,929,715	-				-0.2
3,929,885	-				+0.4
3,929,911	+				-0.3
3,929,912	-				-0.0
3,930,140	+		PP_5603	0.25	+0.4
3,930,243	+		PP_5603	0.33	+0.5
3,930,243	+		PP_5603	0.33	-0.5
3,930,243	+		PP_5603	0.33	-0.4
3,930,244	-		PP_5603	0.33	+0.8
3,930,244	-		PP_5603	0.33	+0.5
3,930,473	+		PP_5603	0.51	-0.2
3,930,474	-		PP_5603	0.51	+0.8