Strain Fitness in Pseudomonas putida KT2440 around PP_3444

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,900,359	+		PP_3443	0.47	-1.3
3,900,360	-		PP_3443	0.47	-0.3
3,900,740	+		PP_3443	0.71	-1.0
3,900,741	-		PP_3443	0.71	-0.5
3,900,782	-		PP_3443	0.73	-0.3
3,900,885	-		PP_3443	0.80	-0.0
3,900,892	+		PP_3443	0.80	-3.6
3,900,892	+		PP_3443	0.80	+0.7
3,900,892	+		PP_3443	0.80	-0.4
3,900,893	-		PP_3443	0.80	+0.4
3,900,893	-		PP_3443	0.80	-2.4
3,901,033	+		PP_3443	0.89	-1.7
3,901,033	+		PP_3443	0.89	-0.5
3,901,034	-		PP_3443	0.89	-1.9
3,901,201	+				+0.1
3,901,202	-				-1.2
3,901,202	-				-1.8
3,901,202	-				+0.1
3,901,202	-				-2.3
3,901,223	+				+1.4
3,901,238	+				-2.2
3,901,276	+				-0.3
3,901,276	+				+0.9
3,901,277	-				-0.4
3,901,369	-				-0.4
3,901,407	+		PP_3444	0.17	-0.7
3,901,584	+		PP_3444	0.54	+1.8
3,901,584	+		PP_3444	0.54	+1.8
3,901,584	+		PP_3444	0.54	-2.1
3,901,584	+		PP_3444	0.54	+1.8
3,901,585	-		PP_3444	0.55	+0.6
3,901,642	+		PP_3444	0.66	+2.0
3,901,642	+		PP_3444	0.66	-0.4
3,901,643	-				+1.1
3,901,643	-		PP_3444	0.67	+2.1
3,901,643	-		PP_3444	0.67	+1.2
3,901,837	+				-2.7
3,901,838	-				-1.5
3,901,960	+		PP_3445	0.11	+0.8
3,901,960	+		PP_3445	0.11	+1.1
3,901,961	-				+1.4
3,901,976	-				-2.8
3,901,988	-				+2.2
3,902,334	+		PP_3445	0.42	+1.7
3,902,335	-		PP_3445	0.42	-1.2
3,902,551	+		PP_3445	0.60	-2.7
3,902,552	-		PP_3445	0.60	+1.2
3,902,552	-		PP_3445	0.60	+2.2
3,902,664	+		PP_3445	0.69	-1.1
3,902,672	+		PP_3445	0.70	-0.8
3,902,694	+		PP_3445	0.72	+0.7
3,902,755	-		PP_3445	0.77	+0.7