Strain Fitness in Pseudomonas putida KT2440 around PP_3361

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,800,124	-		PP_3360	0.41	+1.1
3,800,221	-		PP_3360	0.49	-1.7
3,800,413	+		PP_3360	0.66	+1.5
3,800,413	+		PP_3360	0.66	+0.6
3,800,504	+		PP_3360	0.74	-2.1
3,800,504	+		PP_3360	0.74	-0.4
3,800,505	-		PP_3360	0.75	+0.8
3,800,596	+		PP_3360	0.83	+1.3
3,800,596	+		PP_3360	0.83	+0.7
3,800,597	-		PP_3360	0.83	-0.5
3,800,617	+		PP_3360	0.85	+0.2
3,800,617	+		PP_3360	0.85	-1.6
3,800,617	+		PP_3360	0.85	+0.7
3,800,617	+		PP_3360	0.85	-1.2
3,800,626	+		PP_3360	0.85	-0.7
3,800,626	+		PP_3360	0.85	+0.0
3,800,626	+		PP_3360	0.85	+0.9
3,800,626	+		PP_3360	0.85	-1.7
3,800,819	-				-1.0
3,801,162	-				-1.1
3,801,162	-				-0.7
3,801,162	-				-0.5
3,801,261	+		PP_3361	0.13	+0.5
3,801,261	+		PP_3361	0.13	-0.2
3,801,317	-		PP_3361	0.15	+0.6
3,801,479	+		PP_3361	0.20	-0.6
3,801,480	-		PP_3361	0.20	-2.5
3,801,480	-		PP_3361	0.20	+0.1
3,801,495	-		PP_3361	0.21	-2.9
3,801,653	+		PP_3361	0.26	-0.9
3,801,653	+		PP_3361	0.26	-1.2
3,801,653	+		PP_3361	0.26	-1.3
3,801,656	+		PP_3361	0.26	+0.1
3,801,656	+		PP_3361	0.26	-0.7
3,801,657	-		PP_3361	0.26	-1.9
3,801,657	-		PP_3361	0.26	-3.9
3,801,657	-		PP_3361	0.26	+1.0
3,801,657	-		PP_3361	0.26	+0.3
3,801,657	-		PP_3361	0.26	+0.1
3,801,681	-		PP_3361	0.27	+0.7
3,801,719	+		PP_3361	0.28	-0.3
3,801,719	+		PP_3361	0.28	-0.5
3,801,720	-		PP_3361	0.28	-0.2
3,801,720	-		PP_3361	0.28	-1.5
3,801,720	-		PP_3361	0.28	-0.3
3,801,725	+		PP_3361	0.28	+0.3
3,801,725	+		PP_3361	0.28	-1.0
3,801,725	+		PP_3361	0.28	+0.0
3,801,726	-		PP_3361	0.28	+0.1
3,801,726	-		PP_3361	0.28	-2.8
3,801,726	-		PP_3361	0.28	+2.1
3,801,803	+		PP_3361	0.31	+0.9
3,801,817	-		PP_3361	0.31	-1.3
3,801,908	+		PP_3361	0.34	-1.7
3,802,064	-		PP_3361	0.39	-2.0
3,802,144	-		PP_3361	0.42	-1.2
3,802,355	+		PP_3361	0.49	+0.1
3,802,356	-		PP_3361	0.49	-2.1
3,802,356	-		PP_3361	0.49	-0.7
3,802,547	+		PP_3361	0.55	+0.0
3,802,547	+		PP_3361	0.55	+0.1
3,802,641	+		PP_3361	0.58	-1.0
3,802,644	-		PP_3361	0.58	+0.2
3,802,654	+		PP_3361	0.59	+0.7
3,802,960	+		PP_3361	0.69	-0.0
3,802,995	-		PP_3361	0.70	+0.7
3,803,331	+		PP_3361	0.81	+0.4
3,803,338	+		PP_3361	0.81	-0.8
3,803,339	-		PP_3361	0.81	+1.2
3,803,339	-		PP_3361	0.81	-0.5
3,803,437	+		PP_3361	0.84	+1.2
3,803,438	-		PP_3361	0.84	-1.0
3,803,776	+				-0.1
3,803,776	+				+0.1
3,803,776	+				-0.3
3,803,777	-				+0.6
3,803,796	-				-0.1
3,803,916	+				+0.9
3,803,916	+				-0.4
3,803,917	-				-3.0
3,803,917	-				-1.8
3,803,917	-				+0.0
3,803,952	+				-1.5
3,803,953	-				-0.6
3,803,988	+				+0.6
3,803,989	-				-0.4
3,804,100	+				-0.2
3,804,148	+		PP_3362	0.20	+1.2
3,804,149	-		PP_3362	0.20	-0.0
3,804,239	-		PP_3362	0.41	-1.0
3,804,254	-		PP_3362	0.44	+1.0
3,804,452	+		PP_3362	0.89	-0.2
3,804,452	+		PP_3362	0.89	+1.8
3,804,452	+		PP_3362	0.89	-0.2
3,804,453	-		PP_3362	0.89	+0.7
3,804,501	+				-0.4
3,804,502	-				-1.7
3,804,502	-				+0.5
3,804,516	+				+0.6
3,804,699	+		PP_3363	0.26	+1.4
3,804,907	+		PP_3363	0.59	+0.7
3,804,907	+		PP_3363	0.59	+0.5
3,804,907	+		PP_3363	0.59	-0.5
3,804,908	-		PP_3363	0.59	-0.3
3,804,908	-		PP_3363	0.59	+0.6
3,804,908	-				+3.8