Strain Fitness in Pseudomonas putida KT2440 around PP_3227

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,662,088	+		PP_3226	0.35	+0.3
3,662,089	-		PP_3226	0.35	-0.2
3,662,089	-		PP_3226	0.35	-0.2
3,662,091	-		PP_3226	0.35	+1.3
3,662,121	-		PP_3226	0.38	-1.4
3,662,343	+		PP_3226	0.57	-0.2
3,662,373	+		PP_3226	0.60	+0.3
3,662,577	+		PP_3226	0.78	+2.2
3,662,578	-		PP_3226	0.78	+0.1
3,662,685	-		PP_3226	0.87	-0.8
3,662,856	+				-1.1
3,662,901	+				+0.8
3,663,087	-				-0.2
3,663,136	-		PP_3227	0.13	-1.8
3,663,142	+		PP_3227	0.14	-0.2
3,663,143	-		PP_3227	0.14	-1.5
3,663,143	-		PP_3227	0.14	-1.6
3,663,176	-				+0.8
3,663,176	-		PP_3227	0.18	-3.8
3,663,351	-				-0.8
3,663,368	+		PP_3227	0.39	-1.6
3,663,894	+				-1.1
3,663,971	+				-0.2
3,663,992	-				-0.0
3,664,215	+		PP_3228	0.11	+0.1
3,664,264	+				-1.6
3,664,423	+		PP_3228	0.32	+0.4
3,664,789	+		PP_3228	0.70	-0.8
3,664,790	-		PP_3228	0.70	+1.4
3,664,839	+		PP_3228	0.75	+0.3
3,664,844	-		PP_3228	0.76	+1.1