Strain Fitness in Pseudomonas putida KT2440 around PP_3128

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,540,004	+		PP_3127	0.45	+1.4
3,540,005	-		PP_3127	0.45	+1.2
3,540,146	-		PP_3127	0.54	-0.3
3,540,167	-		PP_3127	0.55	+0.2
3,540,167	-		PP_3127	0.55	-0.4
3,540,309	+		PP_3127	0.65	+0.1
3,540,310	-		PP_3127	0.65	+2.2
3,540,362	-		PP_3127	0.68	+3.0
3,540,718	+				-1.5
3,540,718	+				+1.7
3,540,721	-				+1.7
3,540,798	+				+0.0
3,540,798	+				+0.6
3,540,827	-				-0.4
3,540,827	-				-0.0
3,540,827	-				-0.1
3,540,872	+				+0.6
3,540,873	-				-0.5
3,540,873	-				+0.1
3,540,875	-				-2.0
3,540,875	-				+1.5
3,540,875	-				+0.6
3,540,920	+				-0.8
3,540,920	+				-1.6
3,540,920	+				-0.1
3,540,921	-				+0.5
3,540,942	-				+0.6
3,541,005	+		PP_3128	0.14	+2.3
3,541,005	+		PP_3128	0.14	+0.8
3,541,006	-		PP_3128	0.15	+1.0
3,541,069	-		PP_3128	0.22	+1.9
3,541,112	+				-0.3
3,541,113	-		PP_3128	0.28	-0.8
3,541,113	-		PP_3128	0.28	-0.4
3,541,113	-		PP_3128	0.28	+0.9
3,541,151	+		PP_3128	0.33	+0.2
3,541,151	+		PP_3128	0.33	+2.0
3,541,151	+		PP_3128	0.33	-0.4
3,541,152	-		PP_3128	0.33	-0.4
3,541,220	+		PP_3128	0.41	+2.1
3,541,220	+		PP_3128	0.41	+0.4
3,541,221	-		PP_3128	0.41	+1.3
3,541,221	-		PP_3128	0.41	-1.4
3,541,221	-		PP_3128	0.41	+1.3
3,541,250	-		PP_3128	0.45	+1.0
3,541,290	+		PP_3128	0.50	+1.0
3,541,291	-		PP_3128	0.50	+1.7
3,541,291	-		PP_3128	0.50	-0.6
3,541,686	+				+0.3
3,541,686	+				-0.6
3,541,687	-				-2.1
3,541,690	-				+0.2
3,541,690	-				+1.0
3,541,707	+				+2.5
3,541,708	-				+0.2
3,541,745	+				+0.2
3,541,745	+				+0.6
3,541,745	+				-1.0
3,541,746	-				+0.8
3,542,021	+		PP_3129	0.27	-0.6
3,542,021	+		PP_3129	0.27	-0.8
3,542,021	+		PP_3129	0.27	-0.4
3,542,025	+		PP_3129	0.28	+0.2
3,542,025	+		PP_3129	0.28	-0.4
3,542,026	-		PP_3129	0.28	-0.9
3,542,026	-		PP_3129	0.28	+0.7
3,542,026	-		PP_3129	0.28	-0.5
3,542,073	+		PP_3129	0.33	-0.1
3,542,201	+		PP_3129	0.46	+1.0
3,542,201	+		PP_3129	0.46	+0.8
3,542,201	+		PP_3129	0.46	-0.8
3,542,250	-		PP_3129	0.51	-0.2
3,542,265	+		PP_3129	0.53	-0.0
3,542,266	-		PP_3129	0.53	-0.1
3,542,266	-		PP_3129	0.53	-1.5
3,542,266	-		PP_3129	0.53	-1.4
3,542,319	+		PP_3129	0.58	-1.5
3,542,319	+		PP_3129	0.58	+1.3
3,542,320	-		PP_3129	0.58	+1.0
3,542,379	+		PP_3129	0.64	+0.2
3,542,472	+		PP_3129	0.74	-0.2
3,542,472	+		PP_3129	0.74	-0.6
3,542,473	-		PP_3129	0.74	-0.3
3,542,476	-		PP_3129	0.74	+0.1
3,542,691	+				-0.0