Strain Fitness in Pseudomonas putida KT2440 around PP_3083

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,468,216	+		PP_3082	0.64	+1.2
3,468,231	+		PP_3082	0.65	-2.3
3,468,231	+				+0.8
3,468,232	-		PP_3082	0.65	+0.8
3,468,335	+		PP_3082	0.73	+1.2
3,468,336	-		PP_3082	0.73	-0.0
3,468,361	-		PP_3082	0.75	-0.1
3,468,361	-		PP_3082	0.75	+1.2
3,468,414	+		PP_3082	0.79	-0.5
3,468,486	+		PP_3082	0.84	+1.4
3,468,486	+		PP_3082	0.84	-0.5
3,468,486	+		PP_3082	0.84	-0.2
3,468,486	+		PP_3082	0.84	+0.4
3,468,487	-		PP_3082	0.84	-0.0
3,468,487	-		PP_3082	0.84	-1.8
3,468,637	+				-0.4
3,468,637	+				+0.2
3,468,637	+				-0.6
3,468,637	+				+0.4
3,468,637	+				-1.1
3,468,637	+				-1.2
3,468,637	+				-1.8
3,468,637	+				-0.1
3,468,637	+				-0.4
3,468,637	+				+1.8
3,468,637	+				-1.4
3,468,637	+				+0.8
3,468,638	-				-0.4
3,468,638	-				+0.8
3,468,638	-				-4.1
3,468,638	-				+0.9
3,468,638	-				-0.5
3,468,638	-				+1.2
3,468,638	-				+0.3
3,468,638	-				-0.7
3,468,641	+				-1.1
3,468,642	-				-0.6
3,468,642	-				+0.3
3,468,642	-				-0.1
3,468,642	-				+2.0
3,468,642	-				-1.1
3,468,791	-				+1.0
3,469,034	+				+0.8
3,469,034	+				-0.2
3,469,034	+				-1.1
3,469,034	+				-0.2
3,469,035	-				+0.3
3,469,035	-				-0.3
3,469,176	+		PP_3083	0.13	-0.3
3,469,176	+		PP_3083	0.13	+1.9
3,469,397	+		PP_3083	0.38	-0.2
3,469,397	+		PP_3083	0.38	+1.1
3,469,398	-		PP_3083	0.38	+0.4
3,469,398	-		PP_3083	0.38	-0.3
3,469,398	-		PP_3083	0.38	+2.2
3,469,526	-		PP_3083	0.53	-0.4
3,469,526	-		PP_3083	0.53	-0.2
3,469,827	-		PP_3083	0.87	+4.2
3,469,888	+				+0.2
3,469,888	+				-0.7
3,469,937	+				-0.4
3,469,937	+				+0.4
3,469,937	+				-0.2
3,469,938	-				+0.9
3,469,938	-				+0.6
3,469,938	-				+2.6
3,469,938	-				+1.5
3,470,034	+				+0.5
3,470,073	+				-2.3
3,470,074	-				+0.2
3,470,074	-				-0.1
3,470,074	-				+0.6
3,470,081	+				-1.5
3,470,082	-				+0.4
3,470,082	-				+0.4
3,470,114	-				+0.6
3,470,127	+				+1.4
3,470,127	+				+1.4
3,470,128	-				-0.7
3,470,128	-				+0.5
3,470,158	-				-0.2
3,470,289	+				+0.1
3,470,290	-				-0.1
3,470,290	-				-0.7
3,470,290	-				-0.1
3,470,370	+		PP_3084	0.12	+0.1
3,470,371	-		PP_3084	0.12	+0.3
3,470,572	-		PP_3084	0.20	+1.8
3,470,584	+		PP_3084	0.21	-0.8
3,470,601	+		PP_3084	0.22	+1.2
3,470,681	+		PP_3084	0.25	+1.0
3,470,682	-		PP_3084	0.25	+0.4
3,470,791	-		PP_3084	0.29	+0.7
3,470,791	-		PP_3084	0.29	+0.3
3,470,817	+		PP_3084	0.30	+0.7
3,470,817	+		PP_3084	0.30	+0.2
3,470,818	-		PP_3084	0.30	+0.1