Strain Fitness in Pseudomonas putida KT2440 around PP_3030

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,416,275	-		PP_3029	0.47	-0.1
3,416,377	-		PP_3029	0.53	-0.7
3,416,592	+		PP_3029	0.65	-1.0
3,416,592	+				-1.6
3,417,021	-		PP_3029	0.88	+0.2
3,417,021	-		PP_3029	0.88	+0.1
3,417,035	+		PP_3029	0.89	-0.3
3,417,035	+		PP_3029	0.89	+1.1
3,417,035	+		PP_3029	0.89	-0.2
3,417,036	-		PP_3029	0.89	-0.1
3,417,100	+				+1.2
3,417,116	+				-3.5
3,417,166	+				+0.5
3,417,166	+				-0.4
3,417,167	-				+1.9
3,417,167	-				+0.0
3,417,170	+				+2.7
3,417,170	+				-0.5
3,417,171	-				-0.5
3,417,171	-				+0.3
3,417,219	+				+0.4
3,417,220	-				+0.7
3,417,220	-				-0.5
3,417,275	+				-0.5
3,417,276	-				+0.7
3,417,276	-				+1.0
3,417,278	+				+0.1
3,417,278	+				+0.0
3,417,278	+				+0.6
3,417,278	+				-2.5
3,417,278	+				-0.8
3,417,279	-				+0.3
3,417,279	-				+1.4
3,417,279	-				-0.0
3,417,344	+		PP_3030	0.13	-0.4
3,417,345	-		PP_3030	0.13	-0.5
3,417,447	+		PP_3030	0.26	-0.4
3,417,457	+		PP_3030	0.27	+1.5
3,417,538	+		PP_3030	0.37	-0.7
3,417,538	+		PP_3030	0.37	+0.5
3,417,542	+		PP_3030	0.38	+3.6
3,417,543	-		PP_3030	0.38	+1.5
3,417,582	+		PP_3030	0.43	+1.3
3,417,582	+		PP_3030	0.43	+0.2
3,417,582	+		PP_3030	0.43	+0.4
3,417,582	+		PP_3030	0.43	+1.2
3,417,583	-		PP_3030	0.43	+1.4
3,417,583	-		PP_3030	0.43	-2.8
3,417,583	-		PP_3030	0.43	-1.1
3,417,583	-		PP_3030	0.43	+0.3
3,417,608	+		PP_3030	0.46	-0.4
3,417,609	-		PP_3030	0.46	+0.3
3,417,609	-		PP_3030	0.46	+1.7
3,417,651	+		PP_3030	0.51	+1.3
3,417,651	+		PP_3030	0.51	+0.1
3,417,652	-		PP_3030	0.52	+2.4
3,417,697	-		PP_3030	0.57	+0.8
3,417,731	+		PP_3030	0.61	-0.6
3,417,731	+		PP_3030	0.61	+0.6
3,417,732	-		PP_3030	0.62	-0.9
3,417,732	-		PP_3030	0.62	-0.2
3,417,873	+		PP_3030	0.79	-0.3
3,417,873	+		PP_3030	0.79	+0.3
3,417,933	+		PP_3030	0.87	+0.6
3,417,933	+		PP_3030	0.87	+0.7
3,417,933	+		PP_3030	0.87	-0.2
3,417,933	+		PP_3030	0.87	-0.8
3,417,976	+				+0.7
3,417,976	+				-0.2
3,417,977	-				-0.8
3,417,977	-				+0.3
3,417,982	+				+1.8
3,417,983	-				+0.2
3,417,983	-				+0.5
3,417,993	+				-1.3
3,417,993	+				-0.1
3,418,047	+				-0.4
3,418,047	+				-0.2
3,418,047	+				+0.6
3,418,048	-				+0.2
3,418,048	-				-1.1
3,418,087	+				+0.6
3,418,088	-				-1.1
3,418,095	+				+0.1
3,418,143	+		PP_3031	0.15	-0.5
3,418,291	-		PP_3031	0.62	+1.2
3,418,402	+				-0.7
3,418,402	+				+0.2
3,418,402	+				+0.4
3,418,580	+				-1.2
3,418,673	+		PP_3032	0.35	-0.3
3,418,865	+				+1.3
3,418,880	-				+1.5
3,418,880	-				+0.1
3,418,882	+				+0.5
3,418,883	-				+1.1
3,418,883	-				-2.8
3,418,932	+		PP_5552	0.22	+0.7