Strain Fitness in Pseudomonas putida KT2440 around PP_2896

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,294,862	+		PP_2894	0.81	+2.0
3,294,862	+		PP_2894	0.81	+2.1
3,295,042	+				+0.2
3,295,095	+				-0.3
3,295,238	+		PP_2895	0.31	-1.0
3,295,239	-		PP_2895	0.31	+0.3
3,295,374	-		PP_2895	0.52	+0.9
3,295,374	-		PP_2895	0.52	-0.4
3,295,377	+		PP_2895	0.52	+0.5
3,295,389	+		PP_2895	0.54	+0.0
3,295,389	+		PP_2895	0.54	+0.4
3,295,390	-		PP_2895	0.54	+0.7
3,295,548	+		PP_2895	0.79	+1.8
3,295,548	+		PP_2895	0.79	+0.6
3,295,549	-		PP_2895	0.79	-1.5
3,295,662	+				+1.7
3,295,663	-				-0.1
3,295,664	+				+0.4
3,295,664	+				-1.9
3,295,673	+				+0.6
3,295,673	+				+0.8
3,295,674	-				+1.1
3,295,703	-				+0.5
3,295,703	-				+0.3
3,295,706	+				+0.6
3,295,706	+				+1.4
3,295,707	-				-1.2
3,295,714	+				-0.1
3,295,714	+				+0.9
3,295,729	+				+2.3
3,295,730	-				-0.2
3,295,810	-		PP_2896	0.15	+0.7
3,295,810	-		PP_2896	0.15	-0.2
3,296,005	-		PP_2896	0.67	+1.5
3,296,005	-		PP_2896	0.67	+1.1
3,296,005	-		PP_2896	0.67	+0.7
3,296,005	-		PP_2896	0.67	+1.5
3,296,005	-		PP_2896	0.67	+0.7
3,296,040	+		PP_2896	0.76	+0.2
3,296,060	-		PP_2896	0.81	+1.7
3,296,240	+				+0.0
3,296,256	+				+0.9
3,296,257	-				-1.4
3,296,257	-				-2.8
3,296,257	-				-1.0
3,296,257	-				-1.5
3,296,301	-				-0.6
3,296,372	+				+1.0
3,296,426	+				+1.8
3,296,551	+		PP_2898	0.34	-0.0
3,296,551	+		PP_2898	0.34	+0.8
3,296,552	-		PP_2898	0.34	+0.2
3,296,837	+				+0.6
3,296,837	+				-0.1
3,296,837	+				+1.7
3,296,838	-				+2.6
3,296,838	-				+1.7
3,296,862	+				+3.3
3,296,936	+				+1.3
3,296,936	+				+2.2
3,296,936	+				+0.9
3,296,937	-				-1.1
3,297,018	-		PP_2899	0.13	-1.1
3,297,042	+		PP_2899	0.26	+1.9