Strain Fitness in Pseudomonas putida KT2440 around PP_2803

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,194,121	+		PP_2802	0.44	-0.0
3,194,121	+		PP_2802	0.44	+0.1
3,194,136	+		PP_2802	0.45	+0.5
3,194,353	-		PP_2802	0.61	-1.2
3,194,353	-		PP_2802	0.61	-0.4
3,194,353	-		PP_2802	0.61	+0.1
3,194,628	+		PP_2802	0.82	+1.5
3,194,629	-		PP_2802	0.82	+1.1
3,194,635	-		PP_2802	0.82	+1.2
3,194,677	-		PP_2802	0.86	-1.1
3,194,677	-		PP_2802	0.86	+0.5
3,194,718	+		PP_2802	0.89	-0.7
3,194,763	+				+0.1
3,194,884	-				+0.2
3,194,884	-				+2.1
3,194,898	+				-0.5
3,194,899	-				-0.0
3,194,930	+				+0.3
3,195,225	+		PP_2803	0.29	-0.6
3,195,225	+		PP_2803	0.29	-0.6
3,195,226	-		PP_2803	0.29	+0.2
3,195,226	-		PP_2803	0.29	-0.2
3,195,435	+		PP_2803	0.47	-0.5
3,195,436	-		PP_2803	0.47	+0.1
3,195,436	-		PP_2803	0.47	-1.1
3,195,547	-		PP_2803	0.56	-0.5
3,195,685	-		PP_2803	0.68	-0.6
3,195,685	-				-1.9
3,195,685	-		PP_2803	0.68	-0.4
3,196,023	-				+1.8
3,196,039	+				+0.7
3,196,039	+				+1.3
3,196,039	+				+0.6
3,196,043	+				+1.2
3,196,043	+				-4.0
3,196,044	-				-1.7
3,196,044	-				+0.8
3,196,044	-				+0.4
3,196,110	-				+1.0
3,196,125	+				-0.7
3,196,125	+				-1.4
3,196,126	-				-0.4
3,196,126	-				+2.0
3,196,674	+		PP_2804	0.47	-0.1
3,196,674	+		PP_2804	0.47	+0.6
3,196,675	-		PP_2804	0.48	-1.1
3,196,675	-		PP_2804	0.48	-1.6
3,196,869	-		PP_2804	0.70	+0.3
3,197,016	-		PP_2804	0.87	+0.2