Strain Fitness in Pseudomonas putida KT2440 around PP_2779

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,163,548	-		PP_2778	0.26	+0.0
3,163,584	-		PP_2778	0.29	+0.1
3,163,704	+		PP_2778	0.39	+0.3
3,163,705	-		PP_2778	0.39	+0.2
3,163,714	+		PP_2778	0.39	+1.6
3,163,715	-		PP_2778	0.39	-0.4
3,163,844	+		PP_2778	0.50	+0.0
3,163,847	+		PP_2778	0.50	-0.4
3,163,848	-		PP_2778	0.50	-0.2
3,164,087	+		PP_2778	0.69	-3.2
3,164,087	+		PP_2778	0.69	+0.3
3,164,164	+		PP_2778	0.75	+0.4
3,164,165	-		PP_2778	0.75	+0.7
3,164,517	+				-0.5
3,164,517	+				-1.3
3,164,518	-				-2.2
3,164,661	+		PP_2779	0.16	+0.4
3,164,662	-		PP_2779	0.16	-1.5
3,164,662	-		PP_2779	0.16	-0.7
3,165,063	-		PP_2779	0.53	-0.2
3,165,091	-		PP_2779	0.55	+0.1
3,165,206	+		PP_2779	0.66	+0.7
3,165,207	-		PP_2779	0.66	-0.7
3,165,365	+		PP_2779	0.81	-1.1
3,165,365	+		PP_2779	0.81	-0.9
3,165,406	+		PP_2779	0.85	-0.8
3,165,407	-		PP_2779	0.85	+0.6
3,165,495	-				-0.5
3,165,564	+				-0.9
3,165,723	-		PP_2780	0.12	-1.4