Strain Fitness in Pseudomonas putida KT2440 around PP_2485

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,830,719	-		PP_2483	0.63	-1.6
2,830,772	+		PP_2483	0.71	+1.4
2,830,772	+		PP_2483	0.71	-0.4
2,830,773	-		PP_2483	0.72	-0.0
2,830,826	+		PP_2483	0.81	+0.6
2,830,827	-		PP_2483	0.81	+1.0
2,830,953	+				-1.6
2,830,954	-				-0.2
2,830,981	+				+0.7
2,831,036	+				-3.9
2,831,036	+				-1.5
2,831,039	-				-0.8
2,831,078	+				+0.0
2,831,080	+				-0.4
2,831,080	+				+1.0
2,831,080	+				+0.1
2,831,081	-				+2.2
2,831,081	-				-0.1
2,831,081	-				+0.6
2,831,156	-				+0.1
2,831,226	+				+0.6
2,831,264	-				-2.4
2,831,283	+		PP_2484	0.19	-2.6
2,831,284	-		PP_2484	0.19	-0.5
2,831,284	-		PP_2484	0.19	-0.5
2,831,286	+				+0.0
2,831,334	-		PP_2484	0.36	-0.2
2,831,525	-				-2.5
2,831,525	-				-1.5
2,831,525	-				-0.4
2,831,525	-				-2.1
2,831,525	-				-1.0
2,831,559	-				-1.4
2,831,563	-				-0.6
2,831,659	+				-1.6
2,831,660	-				-1.6
2,831,674	+				+2.0
2,831,675	-				+1.8
2,831,714	-				+1.3
2,831,714	-				+1.2
2,831,714	-				+0.5
2,831,756	-				-1.6
2,831,756	-				-0.2
2,831,760	+				+1.8
2,831,761	-				+0.6
2,831,806	+		PP_2485	0.14	+1.0
2,831,807	-		PP_2485	0.14	+1.6
2,831,830	+		PP_2485	0.16	+0.7
2,831,830	+		PP_2485	0.16	-1.6
2,831,831	-		PP_2485	0.16	-0.3
2,831,831	-		PP_2485	0.16	-0.1
2,831,837	+		PP_2485	0.17	+2.0
2,831,838	-		PP_2485	0.17	-0.9
2,831,849	+		PP_2485	0.18	+0.5
2,831,850	-		PP_2485	0.18	+1.1
2,831,850	-		PP_2485	0.18	+1.3
2,831,857	+		PP_2485	0.19	+2.4
2,831,858	-		PP_2485	0.19	+2.2
2,831,896	+		PP_2485	0.23	+2.4
2,831,897	-		PP_2485	0.23	-0.7
2,831,899	-		PP_2485	0.23	-0.1
2,831,926	+		PP_2485	0.26	+0.3
2,831,926	+		PP_2485	0.26	-0.5
2,831,927	-		PP_2485	0.26	+1.2
2,831,945	+		PP_2485	0.28	+0.9
2,831,982	-		PP_2485	0.32	+0.1
2,832,000	+		PP_2485	0.34	-2.0
2,832,001	-		PP_2485	0.34	-1.8
2,832,075	-		PP_2485	0.41	+0.6
2,832,075	-		PP_2485	0.41	-1.7
2,832,088	+		PP_2485	0.43	+0.3
2,832,341	-		PP_2485	0.68	+1.8
2,832,362	+		PP_2485	0.70	+0.9
2,832,362	+				+2.1
2,832,363	-		PP_2485	0.71	-0.9
2,832,379	+		PP_2485	0.72	+1.8
2,832,379	+		PP_2485	0.72	+1.1
2,832,393	+		PP_2485	0.74	+1.2
2,832,393	+		PP_2485	0.74	+2.2
2,832,393	+		PP_2485	0.74	+0.4
2,832,393	+		PP_2485	0.74	-0.4
2,832,394	-		PP_2485	0.74	+0.1
2,832,394	-		PP_2485	0.74	+0.0
2,832,402	+		PP_2485	0.74	+0.8
2,832,403	-		PP_2485	0.75	+0.0
2,832,516	-		PP_2485	0.86	+2.1
2,832,524	+		PP_2485	0.87	+0.2
2,832,524	+		PP_2485	0.87	-0.2
2,832,524	+		PP_2485	0.87	+0.9
2,832,524	+		PP_2485	0.87	+0.9
2,832,525	-		PP_2485	0.87	+0.2
2,832,525	-		PP_2485	0.87	+0.6
2,832,525	-		PP_2485	0.87	-2.1
2,832,539	-		PP_2485	0.88	-0.1
2,832,557	+				-0.1
2,832,582	-				+0.6
2,832,582	-				+0.8
2,832,582	-				+0.4
2,832,616	+				+1.1
2,832,627	+				+0.4
2,832,648	+				+0.5
2,832,649	-				-0.7
2,832,656	+				+1.6
2,832,656	+				+0.2
2,832,656	+				+1.5
2,832,656	+				-0.1
2,832,656	+				-1.1
2,832,657	-				-0.3
2,832,698	-				-0.6
2,832,754	+				+0.8
2,832,768	+				-0.7
2,832,768	+				+1.7
2,832,794	-				+1.6
2,832,884	+		PP_2486	0.15	-1.8
2,832,912	+		PP_2486	0.17	+1.8
2,832,913	-		PP_2486	0.17	+1.1
2,832,924	+		PP_2486	0.18	-0.7
2,832,949	+		PP_2486	0.20	-1.2
2,832,949	+				+2.5
2,832,950	-		PP_2486	0.21	+0.8
2,832,950	-		PP_2486	0.21	+0.6
2,832,950	-		PP_2486	0.21	+0.9
2,833,021	-		PP_2486	0.27	-1.5
2,833,094	+		PP_2486	0.33	-0.5
2,833,094	+		PP_2486	0.33	+1.0
2,833,095	-		PP_2486	0.33	-0.7
2,833,098	+		PP_2486	0.34	-1.7
2,833,098	+		PP_2486	0.34	+0.6
2,833,099	-		PP_2486	0.34	+1.0
2,833,101	-		PP_2486	0.34	-0.4
2,833,230	+		PP_2486	0.45	+1.6
2,833,253	-		PP_2486	0.47	-0.3
2,833,253	-		PP_2486	0.47	+0.4
2,833,253	-		PP_2486	0.47	+1.0
2,833,350	+		PP_2486	0.56	+0.9
2,833,358	-		PP_2486	0.57	+0.6
2,833,358	-		PP_2486	0.57	+0.1
2,833,370	+		PP_2486	0.58	-0.2
2,833,371	-				+1.1
2,833,588	+		PP_2486	0.77	+0.0
2,833,601	+		PP_2486	0.78	+0.3
2,833,601	+		PP_2486	0.78	-0.7
2,833,601	+		PP_2486	0.78	-1.4
2,833,602	-		PP_2486	0.78	+0.6
2,833,602	-		PP_2486	0.78	-1.8
2,833,602	-		PP_2486	0.78	-0.3
2,833,602	-		PP_2486	0.78	+0.4
2,833,602	-		PP_2486	0.78	+1.3
2,833,602	-		PP_2486	0.78	+0.2
2,833,615	+		PP_2486	0.80	+0.6