Strain Fitness in Pseudomonas putida KT2440 around PP_2318

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,647,174	-				-1.1
2,647,213	-				-0.9
2,647,313	+				+1.1
2,647,939	+				-0.0
2,647,939	+				-1.7
2,647,939	+				-1.5
2,647,940	-				+0.5
2,647,940	-				-0.4
2,647,940	-				-2.3
2,647,973	-				-0.6
2,648,052	+				-0.3
2,648,053	-				-1.5
2,648,102	+		PP_2318	0.14	+0.2
2,648,106	-		PP_2318	0.15	-1.4
2,648,106	-		PP_2318	0.15	-0.4
2,648,106	-		PP_2318	0.15	-1.4
2,648,106	-				-1.4
2,648,268	-		PP_2318	0.42	-2.6
2,648,395	+		PP_2318	0.63	-1.6
2,648,395	+		PP_2318	0.63	+0.8
2,648,422	-		PP_2318	0.67	-0.7
2,648,422	-		PP_2318	0.67	-1.4
2,648,433	+		PP_2318	0.69	-1.9
2,648,457	+		PP_2318	0.73	-1.8
2,648,628	-				-2.1
2,648,649	-				-1.2
2,648,704	+		PP_2319	0.17	+0.2
2,648,704	+		PP_2319	0.17	+0.3
2,648,704	+		PP_2319	0.17	-0.1
2,648,704	+		PP_2319	0.17	+0.5
2,648,705	-		PP_2319	0.17	-0.6
2,648,705	-		PP_2319	0.17	-0.5
2,648,710	+		PP_2319	0.19	-0.4
2,648,710	+		PP_2319	0.19	+0.0
2,648,815	-		PP_2319	0.51	-2.0
2,648,815	-		PP_2319	0.51	-3.6
2,649,042	+				-2.2
2,649,139	+				-2.7
2,649,225	+		PP_2320	0.14	-4.2
2,649,225	+		PP_2320	0.14	-5.3
2,649,403	-		PP_2320	0.33	-5.0
2,649,411	+		PP_2320	0.33	-5.0
2,649,412	-		PP_2320	0.34	-4.9
2,649,412	-		PP_2320	0.34	-4.9
2,649,414	+		PP_2320	0.34	-3.8
2,649,414	+		PP_2320	0.34	-5.1
2,649,415	-		PP_2320	0.34	-5.5
2,649,415	-		PP_2320	0.34	-5.3
2,649,415	-		PP_2320	0.34	-5.4
2,649,441	+		PP_2320	0.37	-4.0
2,649,441	+		PP_2320	0.37	-4.5
2,649,441	+		PP_2320	0.37	-3.4
2,649,441	+		PP_2320	0.37	-4.5
2,649,442	-		PP_2320	0.37	-5.6