Strain Fitness in Pseudomonas putida KT2440 around PP_2295

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,622,538	-				+1.1
2,622,538	-				-0.3
2,622,577	+				+1.1
2,622,577	+				+1.9
2,622,613	+		PP_5516	0.22	+0.8
2,622,613	+		PP_5516	0.22	+0.4
2,622,613	+		PP_5516	0.22	-0.7
2,622,614	-		PP_5516	0.22	+0.4
2,622,614	-		PP_5516	0.22	-0.8
2,622,614	-		PP_5516	0.22	-0.6
2,622,622	+		PP_5516	0.25	-0.9
2,622,644	+		PP_5516	0.34	-0.9
2,622,644	+		PP_5516	0.34	+2.2
2,622,644	+		PP_5516	0.34	-0.1
2,622,645	-		PP_5516	0.35	-0.2
2,622,746	+		PP_5516	0.74	+0.0
2,622,747	-		PP_5516	0.75	+0.4
2,622,753	+		PP_5516	0.77	+2.2
2,622,753	+		PP_5516	0.77	-3.5
2,622,754	-		PP_5516	0.77	-1.3
2,622,754	-		PP_5516	0.77	+1.8
2,622,754	-		PP_5516	0.77	+2.9
2,622,856	-				+0.4
2,622,873	-		PP_5517	0.12	+0.1
2,622,917	+		PP_5517	0.26	-0.5
2,622,917	+		PP_5517	0.26	+1.4
2,622,917	+		PP_5517	0.26	-0.1
2,622,922	+		PP_5517	0.27	-0.2
2,622,922	+		PP_5517	0.27	+1.0
2,622,922	+		PP_5517	0.27	+0.5
2,622,946	+		PP_5517	0.34	+1.3
2,622,952	+		PP_5517	0.36	-0.4
2,622,952	+		PP_5517	0.36	+1.5
2,622,953	-		PP_5517	0.36	-1.8
2,622,953	-		PP_5517	0.36	-1.3
2,623,132	+				+0.6
2,623,132	+				+1.0
2,623,132	+				-0.0
2,623,133	-				-0.9
2,623,133	-				+0.0
2,623,139	-				-1.7
2,623,223	-				+0.1
2,623,223	-				-1.0
2,623,223	-				+0.1
2,623,223	-				-0.1
2,623,252	-				-0.5
2,623,252	-				-0.2
2,623,271	+				-0.7
2,623,271	+				+0.1
2,623,272	-				+2.2
2,623,394	+				+0.6
2,623,395	-				-0.3
2,623,413	+				-1.7
2,623,419	+				-1.1
2,623,419	+				+1.1
2,623,419	+				-1.0
2,623,419	+				+2.8
2,623,420	-				-0.5
2,623,420	-				+0.4
2,623,420	-				+1.2
2,623,440	+				+0.3
2,623,486	-		PP_2295	0.13	+0.8
2,623,525	-		PP_2295	0.20	+1.2
2,623,545	+		PP_2295	0.23	+0.3
2,623,550	+		PP_2295	0.24	+1.5
2,623,551	-		PP_2295	0.24	+0.9
2,623,551	-		PP_2295	0.24	-1.0
2,623,562	+		PP_2295	0.26	+0.1
2,623,563	-		PP_2295	0.26	+0.5
2,623,708	+		PP_2295	0.51	-0.3
2,623,708	+		PP_2295	0.51	+2.0
2,623,708	+		PP_2295	0.51	+0.4
2,623,708	+		PP_2295	0.51	+0.8
2,623,709	-		PP_2295	0.51	+0.5
2,623,709	-		PP_2295	0.51	+0.5
2,623,776	+		PP_2295	0.63	-0.9
2,623,777	-		PP_2295	0.63	-0.6
2,623,777	-		PP_2295	0.63	+2.3
2,623,830	+		PP_2295	0.72	+1.3
2,623,905	-		PP_2295	0.85	+0.9
2,623,959	+				+0.9
2,623,972	-				+0.1
2,623,982	+				+0.2
2,623,982	+				-0.2
2,623,983	-				-0.7
2,623,983	-				+0.2
2,623,983	-				+1.1
2,624,041	-				+0.3
2,624,121	+				+1.1
2,624,122	-				-0.3
2,624,397	+				+0.5
2,624,397	+				-0.6
2,624,401	+				-0.5
2,624,401	+				+3.2
2,624,401	+				+1.0
2,624,747	+				+0.2
2,624,749	+				+0.4
2,624,749	+				+1.4
2,624,749	+				-0.4
2,624,749	+				-4.3
2,624,749	+				+0.8
2,624,749	+				-0.8
2,624,750	-				-0.9
2,624,750	-				-1.9
2,624,764	-				-0.1
2,624,767	+				+1.7
2,624,767	+				-0.8
2,624,767	+				-0.2
2,624,771	+				-0.5
2,624,772	-				+0.1
2,624,801	-				+1.1
2,624,848	-				+0.3
2,624,848	-				+0.6
2,624,855	+		PP_2297	0.11	+0.6
2,624,855	+		PP_2297	0.11	+0.6
2,624,874	-		PP_2297	0.12	+0.2
2,624,886	-		PP_2297	0.13	-0.2
2,624,886	-		PP_2297	0.13	-0.4
2,624,886	-		PP_2297	0.13	-1.7