Strain Fitness in Pseudomonas putida KT2440 around PP_2113

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,410,829	+		PP_2112	0.77	-0.3
2,410,843	+		PP_2112	0.78	+0.6
2,410,843	+		PP_2112	0.78	-0.4
2,410,843	+		PP_2112	0.78	-0.2
2,410,843	+		PP_2112	0.78	+1.3
2,410,844	-		PP_2112	0.78	+1.0
2,410,844	-		PP_2112	0.78	-0.8
2,410,844	-		PP_2112	0.78	+0.3
2,410,844	-		PP_2112	0.78	-0.5
2,410,844	-		PP_2112	0.78	-1.2
2,410,888	+		PP_2112	0.80	-0.9
2,410,889	-		PP_2112	0.80	-0.8
2,410,979	-		PP_2112	0.83	-0.2
2,410,979	-				+1.4
2,411,055	+		PP_2112	0.86	+1.1
2,411,383	+				+0.6
2,411,383	+				-2.4
2,411,390	-				-0.3
2,411,390	-				-2.1
2,411,480	+				-2.2
2,411,481	-				+1.1
2,411,481	-				-2.4
2,411,510	+				-1.0
2,411,511	-				-1.7
2,411,551	-				+1.5
2,411,560	+				-1.2
2,411,565	+				+0.8
2,411,566	-				-1.1
2,411,618	+				+1.1
2,411,618	+				-0.9
2,411,677	+				+1.2
2,411,895	-		PP_2113	0.21	-3.7
2,411,928	+		PP_2113	0.24	-0.7
2,411,928	+		PP_2113	0.24	-0.8
2,412,130	-		PP_2113	0.43	-0.7
2,412,211	+		PP_2113	0.51	-0.4
2,412,211	+		PP_2113	0.51	-0.7
2,412,335	+		PP_2113	0.62	-0.1
2,412,386	-		PP_2113	0.67	+0.6
2,412,505	+		PP_2113	0.78	+1.2
2,412,591	-		PP_2113	0.86	+0.4
2,412,600	+		PP_2113	0.87	-0.4
2,412,600	+		PP_2113	0.87	+0.7
2,412,601	-		PP_2113	0.87	-3.1
2,412,601	-		PP_2113	0.87	-1.2
2,412,677	+				-2.7