Strain Fitness in Pseudomonas putida KT2440 around PP_2111

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,406,051	-		PP_2110	0.23	-0.4
2,406,051	-		PP_2110	0.23	-0.2
2,406,051	-		PP_2110	0.23	+1.0
2,406,075	-		PP_2110	0.26	+1.1
2,406,195	-				+0.1
2,406,614	+		PP_2110	0.85	+1.0
2,406,614	+		PP_2110	0.85	-0.4
2,406,644	+				-1.6
2,406,713	+				-0.8
2,406,714	-				+0.2
2,406,827	+				-0.5
2,406,827	+				-0.3
2,406,849	+				+0.9
2,406,849	+				-0.7
2,406,849	+				-0.0
2,406,849	+				+0.2
2,406,849	+				-0.2
2,406,935	+				+0.5
2,407,199	+		PP_2111	0.13	-0.6
2,407,200	-		PP_2111	0.13	+0.5
2,407,224	+		PP_2111	0.14	-1.5
2,407,249	-		PP_2111	0.16	+0.5
2,407,668	+		PP_2111	0.43	+0.2
2,407,668	+		PP_2111	0.43	-0.3
2,407,668	+		PP_2111	0.43	-0.5
2,407,668	+		PP_2111	0.43	-0.8
2,407,669	-		PP_2111	0.43	-1.2
2,407,669	-		PP_2111	0.43	-0.3
2,407,760	+		PP_2111	0.49	-0.6
2,408,157	-		PP_2111	0.74	+0.1
2,408,177	-		PP_2111	0.75	-1.1
2,408,272	+		PP_2111	0.81	-0.5
2,408,272	+		PP_2111	0.81	-1.9
2,408,272	+		PP_2111	0.81	-0.8
2,408,272	+		PP_2111	0.81	+1.1
2,408,287	+		PP_2111	0.82	-0.0
2,408,360	+		PP_2111	0.87	-1.0
2,408,360	+		PP_2111	0.87	-1.0
2,408,360	+		PP_2111	0.87	+0.6
2,408,361	-		PP_2111	0.87	-0.4
2,408,361	-		PP_2111	0.87	+1.2
2,408,383	-		PP_2111	0.88	+0.8
2,408,383	-		PP_2111	0.88	+0.8
2,408,383	-		PP_2111	0.88	-0.9
2,408,453	+				+0.3
2,408,470	+				-0.4
2,408,470	+				+0.2
2,408,471	-				+0.6
2,408,471	-				-0.2
2,408,496	-				-0.4
2,408,558	+				-0.4
2,408,559	-				-0.6
2,408,572	-				+0.6
2,408,614	+				-0.1
2,408,615	-				+1.7
2,408,625	+				-0.7
2,408,625	+				-1.5
2,408,625	+				-0.8
2,408,626	-				+0.5
2,408,735	-				+0.8
2,408,735	-				-0.2
2,408,735	-				-0.4
2,408,735	-				-1.0
2,408,735	-				+0.3
2,408,762	-				-1.1
2,408,762	-				-1.1
2,408,793	+				-0.2
2,408,793	+				+0.3
2,408,793	+				+0.5
2,408,793	+				+0.1
2,408,793	+				+1.0
2,408,793	+				+0.4
2,408,794	-				+0.3
2,408,794	-				+2.5
2,408,865	-				-1.3
2,408,886	+				+0.7
2,408,956	-				-1.1
2,408,958	+				-1.0
2,408,958	+				-1.4
2,408,959	-				-2.0
2,408,959	-				-0.8
2,408,990	+		PP_2112	0.10	-0.9
2,408,990	+		PP_2112	0.10	+1.7
2,408,991	-		PP_2112	0.10	-3.1
2,409,077	-		PP_2112	0.14	-1.0
2,409,215	+		PP_2112	0.19	-0.6
2,409,274	+				+0.3
2,409,275	-				+0.5
2,409,317	-		PP_2112	0.22	+0.2
2,409,317	-		PP_2112	0.22	-0.1
2,409,416	+		PP_2112	0.26	+0.2
2,409,417	-		PP_2112	0.26	-0.3
2,409,417	-		PP_2112	0.26	-0.6
2,409,475	+		PP_2112	0.28	+0.7
2,409,475	+		PP_2112	0.28	+0.2
2,409,475	+		PP_2112	0.28	-0.6
2,409,475	+		PP_2112	0.28	+0.0
2,409,476	-		PP_2112	0.28	+0.3
2,409,476	-		PP_2112	0.28	+0.1
2,409,499	+		PP_2112	0.29	-1.1
2,409,500	-		PP_2112	0.29	-0.7