Strain Fitness in Pseudomonas putida KT2440 around PP_1875

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,096,576	+				-2.0
2,096,576	+				-1.6
2,096,576	+				-0.3
2,096,577	-				-0.0
2,096,577	-				-1.7
2,096,579	+				-0.2
2,096,579	+				-0.6
2,096,579	+				+0.3
2,096,579	+				-1.1
2,096,579	+				+0.0
2,096,580	-				+0.5
2,096,580	-				+0.1
2,096,580	-				+0.5
2,096,581	+				+0.9
2,096,581	+				+0.9
2,096,581	+				+0.5
2,096,581	+				+0.7
2,096,581	+				-0.4
2,096,581	+				+0.3
2,096,581	+				-2.5
2,096,582	-				-2.7
2,096,582	-				-0.6
2,096,582	-				+1.6
2,096,582	-				-0.0
2,096,582	-				+1.6
2,096,582	-				+0.3
2,096,582	-				+0.7
2,096,582	-				-1.5
2,096,582	-				+0.8
2,096,642	+				-0.1
2,096,642	+				-0.0
2,096,642	+				+1.8
2,096,642	+				+1.2
2,096,642	+				+0.9
2,096,642	+				+0.1
2,096,643	-				-1.0
2,096,643	-				+0.3
2,096,643	-				-0.4
2,096,643	-				-0.5
2,096,703	-		PP_1873	0.15	+0.5
2,096,709	+		PP_1873	0.16	-0.5
2,096,750	+		PP_1873	0.27	+0.7
2,096,750	+		PP_1873	0.27	+1.5
2,096,751	-		PP_1873	0.27	-2.3
2,096,751	-		PP_1873	0.27	-2.1
2,096,777	+		PP_1873	0.33	-0.9
2,096,777	+		PP_1873	0.33	+1.1
2,096,778	-		PP_1873	0.34	-0.5
2,096,778	-		PP_1873	0.34	-1.2
2,096,778	-		PP_1873	0.34	+0.0
2,096,856	-		PP_1873	0.53	-0.5
2,096,856	-		PP_1873	0.53	+0.5
2,097,180	+		PP_1874	0.26	+0.1
2,097,180	+		PP_1874	0.26	+0.6
2,097,180	+		PP_1874	0.26	-0.4
2,097,181	-		PP_1874	0.26	+0.8
2,097,181	-		PP_1874	0.26	-0.0
2,097,211	-		PP_1874	0.32	-1.3
2,097,233	-		PP_1874	0.37	+0.4
2,097,308	+		PP_1874	0.52	+2.0
2,097,404	+		PP_1874	0.72	+0.8
2,097,480	+		PP_1874	0.87	-0.7
2,097,481	-		PP_1874	0.87	+0.3
2,097,571	+				+1.9
2,097,571	+				+0.9
2,097,571	+				+0.2
2,097,602	+				+0.2
2,097,603	-				+1.3
2,097,884	-		PP_1875	0.15	+2.5
2,097,884	-		PP_1875	0.15	+2.3
2,097,884	-		PP_1875	0.15	+1.8
2,097,892	+		PP_1875	0.15	+0.0
2,097,893	-		PP_1875	0.15	-0.0
2,098,194	-		PP_1875	0.28	+0.8
2,098,194	-		PP_1875	0.28	+0.3
2,098,523	-		PP_1875	0.42	+0.1
2,098,523	-		PP_1875	0.42	+1.0
2,098,774	+		PP_1875	0.53	+1.1
2,098,774	+		PP_1875	0.53	+0.1
2,098,774	+				+1.2
2,098,775	-		PP_1875	0.53	+1.9
2,098,775	-		PP_1875	0.53	+1.6
2,098,809	+		PP_1875	0.54	+1.0
2,098,810	-		PP_1875	0.54	-0.9
2,098,826	-		PP_1875	0.55	-0.7
2,098,826	-		PP_1875	0.55	+1.2
2,098,826	-		PP_1875	0.55	+0.1
2,099,102	+		PP_1875	0.67	+0.6
2,099,309	+		PP_1875	0.75	+1.9
2,099,309	+		PP_1875	0.75	+1.0
2,099,310	-		PP_1875	0.75	+1.7
2,099,310	-		PP_1875	0.75	+1.3
2,099,310	-		PP_1875	0.75	-0.3
2,099,426	+		PP_1875	0.80	-0.4
2,099,426	+		PP_1875	0.80	+0.1
2,099,427	-		PP_1875	0.80	-0.8
2,099,441	+		PP_1875	0.81	+1.1
2,099,441	+		PP_1875	0.81	+2.0
2,099,441	+		PP_1875	0.81	-0.1
2,099,441	+		PP_1875	0.81	-0.1
2,099,442	-		PP_1875	0.81	-0.0
2,099,442	-		PP_1875	0.81	+2.2
2,099,442	-		PP_1875	0.81	+1.0
2,099,442	-		PP_1875	0.81	+1.6
2,099,466	-		PP_1875	0.82	+1.9
2,099,657	+				+0.4
2,099,657	+				+2.6
2,099,657	+				-0.7
2,099,658	-				+0.2
2,099,658	-				-0.4
2,099,816	+				+1.2
2,099,816	+				-0.0
2,099,816	+				-0.7
2,099,816	+				+0.2
2,099,817	-				+1.7
2,099,817	-				+1.2
2,099,842	-				-0.8
2,099,993	+				+0.3
2,099,993	+				-2.6
2,099,994	-				-2.9
2,100,000	+				-1.4
2,100,000	+				-0.1
2,100,001	-				-3.3
2,100,083	+				+0.9
2,100,137	+				+0.9
2,100,565	+		PP_1876	0.53	-1.0
2,100,629	-		PP_1876	0.60	+0.1
2,100,775	+		PP_1876	0.77	+0.1
2,100,775	+		PP_1876	0.77	-0.4