Strain Fitness in Pseudomonas putida KT2440 around PP_1868

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,089,721	+		PP_1867	0.20	-0.1
2,089,727	+		PP_1867	0.21	+0.2
2,089,895	+		PP_1867	0.43	-0.4
2,089,896	-		PP_1867	0.43	+2.7
2,089,896	-		PP_1867	0.43	-0.5
2,089,925	+		PP_1867	0.47	-0.0
2,089,925	+		PP_1867	0.47	-0.7
2,089,925	+		PP_1867	0.47	-0.1
2,089,925	+		PP_1867	0.47	-0.5
2,089,925	+		PP_1867	0.47	-2.9
2,089,926	-		PP_1867	0.47	-0.6
2,089,997	+		PP_1867	0.57	+1.7
2,089,997	+		PP_1867	0.57	-0.0
2,090,279	+				+0.9
2,090,318	-				+1.4
2,090,354	-				+2.3
2,090,402	+				+1.1
2,090,437	-				+0.7
2,090,444	+				+0.7
2,090,453	+				-0.2
2,090,453	+				+3.1
2,090,454	-				-1.2
2,090,455	+				+1.5
2,090,455	+				-0.3
2,090,455	+				+0.4
2,090,458	+				+1.3
2,090,458	+				-0.7
2,090,473	+				-1.9
2,091,226	-				-0.7
2,092,458	+				+1.5
2,092,458	+				+1.2
2,092,459	-				+0.3
2,092,459	-				-1.0
2,092,570	+		PP_1869	0.16	-0.5
2,092,570	+		PP_1869	0.16	+0.4
2,092,723	+		PP_1869	0.35	-0.8
2,092,739	+		PP_1869	0.37	+1.7
2,092,739	+		PP_1869	0.37	-0.9
2,092,740	-		PP_1869	0.37	+0.0
2,092,740	-		PP_1869	0.37	+1.6
2,092,740	-		PP_1869	0.37	+0.5
2,092,742	+		PP_1869	0.37	+0.5
2,092,742	+		PP_1869	0.37	-1.0
2,092,748	+		PP_1869	0.38	-0.1
2,092,748	+		PP_1869	0.38	+0.4
2,092,748	+		PP_1869	0.38	-1.5
2,092,748	+		PP_1869	0.38	+0.4
2,092,748	+		PP_1869	0.38	+1.2
2,092,749	-		PP_1869	0.38	-0.6
2,092,749	-		PP_1869	0.38	-1.1
2,092,749	-		PP_1869	0.38	+0.5
2,092,749	-		PP_1869	0.38	+0.6
2,092,749	-		PP_1869	0.38	-0.1
2,092,749	-		PP_1869	0.38	+1.6
2,092,749	-		PP_1869	0.38	+0.7
2,092,857	+				-1.1
2,092,998	+		PP_1869	0.70	-0.4
2,092,998	+		PP_1869	0.70	-2.1
2,092,999	-		PP_1869	0.70	+0.9
2,093,020	-		PP_1869	0.72	+0.8
2,093,230	+				+0.8
2,093,230	+				-1.1
2,093,251	+				-0.8
2,093,256	-				+0.3
2,093,256	-				-0.5