Strain Fitness in Pseudomonas putida KT2440 around PP_1810

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,035,686	+		PP_5477	0.16	-1.2
2,035,687	-		PP_5477	0.16	+0.2
2,035,862	+		PP_5477	0.61	-0.3
2,035,873	+		PP_5477	0.64	+2.1
2,035,874	-		PP_5477	0.64	+1.5
2,035,874	-		PP_5477	0.64	+0.1
2,035,874	-		PP_5477	0.64	+1.9
2,035,882	-		PP_5477	0.66	+0.3
2,035,967	+		PP_5477	0.88	+1.4
2,035,968	-		PP_5477	0.88	-0.4
2,035,978	+				+1.1
2,035,978	+				+2.5
2,035,978	+				+0.3
2,035,978	+				+0.9
2,035,979	-				+1.3
2,036,004	+				+0.7
2,036,044	+				+0.4
2,036,044	+				+0.5
2,036,044	+				-0.7
2,036,044	+				+0.4
2,036,044	+				-1.4
2,036,044	+				+1.7
2,036,044	+				-0.1
2,036,044	+				-0.9
2,036,044	+				-0.1
2,036,045	-				-0.8
2,036,045	-				-0.0
2,036,045	-				-0.1
2,036,045	-				-0.7
2,036,045	-				-0.7
2,036,045	-				+0.6
2,036,045	-				+0.7
2,036,045	-				-0.3
2,036,045	-				+0.6
2,036,045	-				+0.7
2,036,045	-				-1.1
2,036,045	-				+1.5
2,036,045	-				+1.3
2,036,045	-				+0.7
2,036,085	-				-0.3
2,036,085	-				+0.4
2,036,146	+				+0.1
2,036,149	-				-0.3
2,036,149	-				-0.0
2,036,149	-				-0.6
2,036,174	+				-0.3
2,036,175	-				-0.7
2,036,192	+				+1.9
2,036,193	-				+1.5
2,036,220	-				+0.5
2,036,237	+				-0.8
2,036,238	-				+0.1
2,036,308	+				+3.7
2,036,308	+				-0.5
2,036,308	+				-0.6
2,036,398	+				+0.3
2,036,399	-				+1.6
2,036,417	-				+0.1
2,036,454	-				+0.9
2,036,544	-				+2.2
2,036,561	+				+0.1
2,036,561	+				+0.1
2,036,562	-				+0.9
2,036,562	-				+0.7
2,036,649	-				+0.3
2,036,670	-				+0.1
2,036,757	+		PP_1810	0.12	-0.3
2,036,766	+		PP_1810	0.13	-0.1
2,036,784	+		PP_1810	0.16	+0.8
2,036,785	-		PP_1810	0.16	+0.1
2,036,827	+		PP_1810	0.22	+1.0
2,036,827	+		PP_1810	0.22	-0.7
2,036,827	+		PP_1810	0.22	+2.6
2,036,828	-		PP_1810	0.22	+0.3
2,036,828	-		PP_1810	0.22	-0.7
2,036,891	-		PP_1810	0.30	+3.8
2,036,891	-		PP_1810	0.30	-0.1
2,036,893	+		PP_1810	0.31	-0.3
2,036,893	+		PP_1810	0.31	+1.0
2,036,894	-		PP_1810	0.31	-0.3
2,036,894	-		PP_1810	0.31	-0.1
2,037,082	+		PP_1810	0.56	+2.9
2,037,112	+		PP_1810	0.60	+0.4
2,037,246	-		PP_1810	0.78	+3.2
2,037,308	-		PP_1810	0.87	+1.3
2,037,377	-				-0.8
2,037,432	+				-0.0
2,037,432	+				+2.2
2,037,432	+				-1.2
2,037,432	+				+1.8
2,037,433	-				+1.1
2,037,576	+				+0.4
2,037,576	+				+0.3
2,037,577	-				+0.5
2,037,669	+		PP_5478	0.23	+0.2
2,037,669	+		PP_5478	0.23	-1.7
2,037,719	+		PP_5478	0.41	-1.3
2,037,719	+		PP_5478	0.41	-0.5
2,037,736	-		PP_5478	0.47	+1.7
2,037,762	+		PP_5478	0.57	+0.3
2,037,762	+		PP_5478	0.57	-0.1
2,037,763	-		PP_5478	0.57	+0.8
2,037,763	-		PP_5478	0.57	+0.7
2,037,763	-		PP_5478	0.57	-0.8
2,037,883	+				+0.9
2,037,883	+				+0.5
2,037,884	-				+0.4
2,037,884	-				+0.8
2,037,884	-				+0.7
2,037,884	-				+0.6
2,037,896	+				+3.9
2,037,896	+				+2.2
2,037,897	-				-0.2
2,037,897	-				-1.1
2,037,897	-				-0.9
2,037,945	+				+1.4
2,037,971	+				+1.0
2,037,971	+				+2.4
2,038,004	+				+2.3
2,038,004	+				+1.0
2,038,005	-				+0.2
2,038,031	+				+2.3
2,038,032	-				+0.3
2,038,137	+				+2.8
2,038,137	+				+0.0
2,038,137	+				+0.9
2,038,137	+				-1.0
2,038,137	+				+0.3
2,038,137	+				-0.1
2,038,138	-				+3.5
2,038,311	+				+1.1
2,038,338	+				+0.2
2,038,338	+				-1.0
2,038,339	-				-0.3
2,038,339	-				+1.8
2,038,339	-				+1.3
2,038,382	+				-1.3
2,038,383	-				+0.5