Strain Fitness in Pseudomonas putida KT2440 around PP_1628

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,825,590	+		PP_1627	0.16	+1.0
1,825,758	+		PP_1627	0.32	+3.1
1,825,763	+		PP_1627	0.32	-1.5
1,825,864	+		PP_1627	0.41	+1.3
1,825,864	+				+0.6
1,825,864	+		PP_1627	0.41	+0.7
1,825,864	+		PP_1627	0.41	+0.9
1,825,932	+		PP_1627	0.47	+0.1
1,825,933	-		PP_1627	0.48	+0.7
1,826,014	+		PP_1627	0.55	-0.7
1,826,014	+		PP_1627	0.55	+0.7
1,826,015	-		PP_1627	0.55	+0.9
1,826,015	-		PP_1627	0.55	+2.6
1,826,031	+		PP_1627	0.57	-0.1
1,826,032	-		PP_1627	0.57	+1.5
1,826,032	-		PP_1627	0.57	+0.9
1,826,032	-		PP_1627	0.57	+0.3
1,826,107	+		PP_1627	0.63	-0.7
1,826,125	+		PP_1627	0.65	+0.3
1,826,125	+		PP_1627	0.65	+0.8
1,826,125	+		PP_1627	0.65	+0.5
1,826,125	+		PP_1627	0.65	+1.3
1,826,273	+		PP_1627	0.79	+0.3
1,826,274	-		PP_1627	0.79	-1.1
1,826,312	-		PP_1627	0.82	+1.0
1,826,338	+		PP_1627	0.85	-0.5
1,826,339	-		PP_1627	0.85	+0.6
1,826,528	+				+0.9
1,826,528	+				+0.1
1,826,529	-				+0.9
1,826,529	-				+0.1
1,826,575	+				-1.1
1,826,575	+				+1.5
1,826,576	-				-1.2
1,826,679	+		PP_1628	0.24	-0.0
1,826,680	-		PP_1628	0.25	+1.4
1,826,680	-		PP_1628	0.25	+0.6
1,826,711	+		PP_1628	0.31	+1.9
1,826,720	+		PP_1628	0.33	+0.1
1,826,720	+		PP_1628	0.33	+0.4
1,826,720	+				-0.8
1,826,720	+		PP_1628	0.33	+2.5
1,826,721	-		PP_1628	0.33	+1.3
1,827,024	+				+0.6
1,827,041	+				+1.0
1,827,098	-				-0.0
1,827,287	+		PP_1629	0.13	-1.5
1,827,336	+		PP_1629	0.18	-0.4
1,827,336	+		PP_1629	0.18	-3.0
1,827,337	-		PP_1629	0.18	-1.1
1,827,407	+		PP_1629	0.24	+0.4
1,827,407	+		PP_1629	0.24	-1.6
1,827,407	+		PP_1629	0.24	-1.3
1,827,408	-		PP_1629	0.24	+0.4
1,827,450	+		PP_1629	0.28	-0.9
1,827,450	+		PP_1629	0.28	-0.1
1,827,592	+		PP_1629	0.42	+0.2
1,827,671	+		PP_1629	0.49	-0.2
1,827,671	+		PP_1629	0.49	-0.1
1,827,672	-		PP_1629	0.49	-0.9
1,827,672	-		PP_1629	0.49	-0.2
1,827,731	+		PP_1629	0.55	-1.4
1,827,731	+		PP_1629	0.55	-1.9
1,827,796	-		PP_1629	0.61	-1.8
1,827,944	+		PP_1629	0.75	-0.7
1,827,944	+		PP_1629	0.75	-0.2
1,827,948	+		PP_1629	0.75	-1.6
1,827,949	-		PP_1629	0.75	+0.4
1,827,949	-		PP_1629	0.75	-1.1
1,827,979	+		PP_1629	0.78	+1.3
1,827,980	-		PP_1629	0.78	-0.8
1,828,020	+		PP_1629	0.82	-1.2
1,828,020	+		PP_1629	0.82	-1.0
1,828,021	-		PP_1629	0.82	+0.8