Strain Fitness in Pseudomonas putida KT2440 around PP_1469

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,673,003	+				-0.5
1,673,158	+		PP_1468	0.22	-1.9
1,673,387	-		PP_1468	0.48	-2.4
1,673,533	+		PP_1468	0.64	-1.5
1,673,637	+		PP_1468	0.76	-2.4
1,673,791	+				+0.8
1,673,791	+				-1.2
1,673,791	+				-2.0
1,673,791	+				-2.5
1,673,791	+				-0.7
1,673,791	+				-1.1
1,673,792	-				-2.5
1,673,792	-				-1.4
1,673,794	-				-3.7
1,673,915	-				-0.1
1,673,915	-				+1.3
1,673,915	-				+1.2
1,673,957	-				+0.4
1,674,054	+		PP_1469	0.11	-1.0
1,674,054	+		PP_1469	0.11	+2.2
1,674,055	-		PP_1469	0.11	-0.6
1,674,082	-		PP_1469	0.15	+1.3
1,674,111	+		PP_1469	0.18	+1.0
1,674,111	+		PP_1469	0.18	+0.6
1,674,111	+		PP_1469	0.18	-0.3
1,674,181	+		PP_1469	0.27	+2.2
1,674,181	+		PP_1469	0.27	+1.2
1,674,181	+		PP_1469	0.27	+1.5
1,674,181	+		PP_1469	0.27	+1.2
1,674,182	-		PP_1469	0.27	-0.4
1,674,214	+		PP_1469	0.31	+0.5
1,674,215	-		PP_1469	0.32	+3.2
1,674,250	+		PP_1469	0.36	-0.5
1,674,251	-		PP_1469	0.36	-0.4
1,674,312	+		PP_1469	0.44	+0.1
1,674,408	+		PP_1469	0.56	-0.5
1,674,408	+		PP_1469	0.56	+0.7
1,674,408	+		PP_1469	0.56	-0.4
1,674,408	+		PP_1469	0.56	+0.4
1,674,478	+		PP_1469	0.65	+0.0
1,674,479	-				+2.3
1,674,748	+				-1.0
1,674,748	+				-1.2
1,674,748	+				-0.9
1,674,748	+				-0.6
1,674,748	+				-0.1
1,674,761	+				-2.1
1,674,761	+				-0.6
1,674,895	+				+2.0
1,675,076	+				+3.0
1,675,076	+				-2.5
1,675,716	+				+1.7
1,675,716	+		PP_1470	0.68	+1.4
1,675,733	+				-1.1
1,675,742	+				+0.4