Strain Fitness in Pseudomonas putida KT2440 around PP_1444

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,644,053	-		PP_1443	0.72	-0.1
1,644,182	+		PP_1443	0.77	-1.2
1,644,182	+		PP_1443	0.77	-1.0
1,644,183	-		PP_1443	0.77	+0.5
1,644,203	+		PP_1443	0.78	-2.0
1,644,223	+		PP_1443	0.79	-0.9
1,644,224	-		PP_1443	0.79	-0.9
1,644,224	-		PP_1443	0.79	-3.2
1,644,299	+		PP_1443	0.82	+0.5
1,644,300	-		PP_1443	0.82	-0.5
1,644,317	+		PP_1443	0.82	+1.1
1,644,620	+				-1.3
1,644,620	+				-0.7
1,644,620	+				-0.3
1,644,621	-				-1.4
1,644,621	-				+0.6
1,644,621	-				+1.0
1,644,762	+				+0.9
1,644,762	+				-1.2
1,644,762	+				-1.4
1,644,762	+				+0.4
1,644,762	+				+0.3
1,644,762	+				-0.3
1,644,763	-				+0.9
1,644,763	-				+0.6
1,644,763	-				-1.5
1,644,771	+				+0.6
1,644,771	+				-1.0
1,644,771	+				+0.5
1,644,771	+				-1.5
1,644,771	+				-0.1
1,644,771	+				-1.1
1,644,772	-				+1.3
1,644,772	-				-0.2
1,644,772	-				-0.2
1,644,772	-				+0.0
1,644,772	-				-1.0
1,644,772	-				+0.9
1,644,772	-				+0.0
1,644,772	-				+1.4
1,644,772	-				-0.8
1,644,865	+				-0.3
1,644,865	+				-1.4
1,644,866	-				+0.0
1,644,946	+				-0.3
1,644,961	+				+2.0
1,644,973	+				+1.8
1,644,974	-				+1.6
1,644,974	-				-0.6
1,644,974	-				-1.4
1,645,027	+				+0.8
1,645,027	+				+2.8
1,645,027	+				+2.6
1,645,027	+				+1.9
1,645,027	+				+1.2
1,645,028	-				+1.4
1,645,051	+				-0.1
1,645,051	+				+1.7
1,645,051	+				+1.5
1,645,065	-				-0.3
1,645,123	+				-0.4
1,645,123	+				+1.4
1,645,123	+				+0.7
1,645,136	-				+0.4
1,645,136	-				+0.4
1,645,136	-				+1.3
1,645,306	+		PP_1444	0.15	+1.5
1,645,307	-		PP_1444	0.15	+1.8
1,645,333	-		PP_1444	0.16	+2.1
1,645,333	-		PP_1444	0.16	+1.4
1,645,373	-		PP_1444	0.18	+2.1
1,645,474	+		PP_1444	0.22	+0.8
1,645,474	+		PP_1444	0.22	+0.7
1,645,474	+		PP_1444	0.22	+2.6
1,645,475	-		PP_1444	0.22	+2.2
1,645,475	-		PP_1444	0.22	+1.7
1,645,537	-		PP_1444	0.25	+0.5
1,645,537	-		PP_1444	0.25	-0.6
1,645,537	-		PP_1444	0.25	+1.5
1,645,537	-		PP_1444	0.25	+0.1
1,645,588	+		PP_1444	0.27	+1.9
1,645,588	+		PP_1444	0.27	+0.8
1,645,785	-		PP_1444	0.35	+1.2
1,645,807	+		PP_1444	0.36	+1.4
1,645,808	-				+0.6
1,645,830	+		PP_1444	0.37	+2.3
1,645,872	+		PP_1444	0.38	+0.8
1,645,873	-		PP_1444	0.38	+1.4
1,645,930	+		PP_1444	0.41	+1.3
1,646,050	+		PP_1444	0.46	+1.3
1,646,050	+		PP_1444	0.46	+1.7
1,646,051	-		PP_1444	0.46	+0.4
1,646,051	-		PP_1444	0.46	+0.9
1,646,156	+		PP_1444	0.50	+2.3
1,646,156	+		PP_1444	0.50	+2.0
1,646,156	+		PP_1444	0.50	+2.2
1,646,299	+		PP_1444	0.56	+1.6
1,646,300	-		PP_1444	0.56	+1.9
1,646,302	+		PP_1444	0.56	+1.5
1,646,303	-		PP_1444	0.56	+2.1
1,646,303	-		PP_1444	0.56	+1.4
1,646,303	-		PP_1444	0.56	+1.1
1,646,303	-		PP_1444	0.56	+0.8
1,646,428	+		PP_1444	0.61	+0.2
1,646,524	+		PP_1444	0.65	+2.2
1,646,525	-		PP_1444	0.66	+1.1
1,646,525	-		PP_1444	0.66	+1.3
1,646,527	+		PP_1444	0.66	+0.8
1,646,527	+		PP_1444	0.66	+1.0
1,646,528	-		PP_1444	0.66	+1.6
1,646,599	+		PP_1444	0.69	+1.3
1,646,665	+		PP_1444	0.71	+1.5
1,646,810	-		PP_1444	0.77	+2.6
1,647,105	+		PP_1444	0.90	+1.1
1,647,106	-		PP_1444	0.90	+0.8
1,647,151	+				+0.8
1,647,226	+				+1.4
1,647,226	+				+3.6
1,647,227	-				+1.6
1,647,227	-				+0.9
1,647,227	-				+1.5
1,647,229	+				+2.4
1,647,229	+				+0.2
1,647,229	+				+1.5
1,647,230	-				+1.1
1,647,230	-				+0.8
1,647,230	-				+2.1
1,647,359	+				+1.3
1,647,359	+				+1.2
1,647,359	+				+2.0
1,647,359	+				+0.8
1,647,359	+				+1.7
1,647,360	-				+1.0
1,647,360	-				+1.4
1,647,360	-				+1.5
1,647,463	+				+0.6
1,647,464	-				-2.2
1,647,464	-				+1.3
1,647,514	+				+1.8
1,647,514	+				+1.7
1,647,530	-		PP_1445	0.11	-1.3
1,647,569	-		PP_1445	0.14	+0.2
1,647,569	-		PP_1445	0.14	+0.0
1,647,574	+		PP_1445	0.14	+1.1
1,647,575	-		PP_1445	0.14	-1.6
1,647,575	-		PP_1445	0.14	+1.7
1,647,712	+		PP_1445	0.24	+2.4
1,647,712	+		PP_1445	0.24	-0.6
1,647,712	+		PP_1445	0.24	+1.8
1,647,713	-		PP_1445	0.24	-1.0
1,647,713	-		PP_1445	0.24	-0.9
1,647,713	-		PP_1445	0.24	-1.4
1,647,713	-		PP_1445	0.24	-0.2
1,647,713	-		PP_1445	0.24	+0.9
1,647,920	+		PP_1445	0.40	+1.5
1,647,921	-		PP_1445	0.40	-0.9
1,647,921	-		PP_1445	0.40	-0.6
1,647,921	-		PP_1445	0.40	-1.5
1,647,925	+		PP_1445	0.40	+2.3
1,647,926	-		PP_1445	0.40	-2.1
1,647,928	+		PP_1445	0.41	+0.8
1,647,928	+		PP_1445	0.41	+0.5
1,647,928	+		PP_1445	0.41	+2.0
1,647,929	-		PP_1445	0.41	-0.5
1,647,929	-		PP_1445	0.41	-0.3
1,647,929	-		PP_1445	0.41	-2.5
1,647,929	-		PP_1445	0.41	-3.0
1,647,931	+		PP_1445	0.41	+2.5
1,647,931	+		PP_1445	0.41	+0.6
1,647,944	-		PP_1445	0.42	-0.3
1,647,965	+		PP_1445	0.43	+1.7
1,647,966	-		PP_1445	0.43	-0.7
1,647,966	-		PP_1445	0.43	-2.4
1,647,966	-		PP_1445	0.43	-1.7
1,647,966	-		PP_1445	0.43	-1.9
1,647,978	+		PP_1445	0.44	-1.8
1,647,978	+		PP_1445	0.44	+1.7
1,648,087	+		PP_1445	0.52	+0.6
1,648,087	+		PP_1445	0.52	+0.7
1,648,088	-		PP_1445	0.53	-0.4
1,648,101	-		PP_1445	0.53	-1.6
1,648,108	+		PP_1445	0.54	+0.1
1,648,108	+		PP_1445	0.54	-1.1
1,648,108	+		PP_1445	0.54	+2.3
1,648,109	-		PP_1445	0.54	-1.0
1,648,280	-		PP_1445	0.67	-0.9