Strain Fitness in Pseudomonas putida KT2440 around PP_1437

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,636,516	+				-2.4
1,636,516	+				+1.1
1,636,516	+				+0.9
1,636,516	+				-1.6
1,636,517	-				-1.9
1,636,517	-				+1.4
1,636,517	-				-0.1
1,636,517	-				-0.9
1,636,517	-				-2.4
1,636,517	-				-0.8
1,637,389	+				+0.7
1,637,576	+		PP_1437	0.16	+0.7
1,637,576	+		PP_1437	0.16	+0.4
1,637,623	+		PP_1437	0.19	-0.1
1,637,624	-		PP_1437	0.19	-0.7
1,637,723	+		PP_1437	0.26	+0.7
1,637,724	-		PP_1437	0.27	+0.2
1,637,752	-		PP_1437	0.29	+1.0
1,637,818	+		PP_1437	0.33	+0.2
1,637,818	+		PP_1437	0.33	+1.0
1,637,818	+		PP_1437	0.33	+3.1
1,637,818	+		PP_1437	0.33	+0.9
1,637,819	-		PP_1437	0.33	+0.6
1,638,061	+		PP_1437	0.51	+0.5
1,638,100	+		PP_1437	0.54	+1.0
1,638,221	+		PP_1437	0.62	+0.6
1,638,256	-		PP_1437	0.65	-0.9
1,638,256	-		PP_1437	0.65	-1.5
1,638,256	-		PP_1437	0.65	-0.2
1,638,494	+		PP_1437	0.82	+1.7
1,638,494	+		PP_1437	0.82	+1.4
1,638,494	+		PP_1437	0.82	+1.2
1,638,495	-		PP_1437	0.82	-1.1
1,638,495	-		PP_1437	0.82	-1.6
1,638,754	+				+0.3
1,638,759	-				-0.0
1,638,777	+				-0.4
1,638,777	+				+0.6
1,639,122	-		PP_1438	0.57	+0.5
1,639,122	-		PP_1438	0.57	-0.5
1,639,122	-		PP_1438	0.57	+0.0
1,639,122	-		PP_1438	0.57	-0.9
1,639,122	-		PP_1438	0.57	-1.8
1,639,277	+		PP_1438	0.80	+0.7
1,639,277	+		PP_1438	0.80	-0.8
1,639,278	-		PP_1438	0.80	-0.2
1,639,278	-		PP_1438	0.80	+1.2
1,639,278	-		PP_1438	0.80	-1.1
1,639,337	+		PP_1438	0.89	-0.8
1,639,338	-		PP_1438	0.89	-2.5
1,639,367	+				+0.3
1,639,368	-				+1.3
1,639,403	-				+0.0
1,639,422	+				-0.2
1,639,423	-				+1.2
1,639,453	-				-0.8
1,639,453	-				+0.7
1,639,523	+				+1.0
1,639,568	-				-0.5
1,639,581	+				-1.6
1,639,582	-				+2.8
1,639,582	-				+0.1
1,639,582	-				-1.0
1,639,643	+				+0.2
1,639,706	+				-1.6
1,639,706	+				-0.9
1,639,706	+				-0.2
1,639,706	+				-0.3
1,639,737	-				-0.4
1,639,737	-				-0.8
1,639,737	-				+0.3