Strain Fitness in Pseudomonas putida KT2440 around PP_1283

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,464,696	-		PP_1282	0.36	+1.7
1,464,761	+		PP_1282	0.40	-0.4
1,464,761	+		PP_1282	0.40	+0.3
1,464,761	+		PP_1282	0.40	+0.0
1,464,762	-		PP_1282	0.41	-0.0
1,464,762	-		PP_1282	0.41	+0.6
1,464,762	-		PP_1282	0.41	-0.7
1,464,762	-		PP_1282	0.41	+0.5
1,464,762	-		PP_1282	0.41	+1.9
1,464,789	-		PP_1282	0.42	+0.3
1,464,902	+		PP_1282	0.50	+0.9
1,464,902	+		PP_1282	0.50	+1.0
1,464,902	+		PP_1282	0.50	-0.0
1,464,903	-		PP_1282	0.50	-1.9
1,464,914	+		PP_1282	0.51	-0.7
1,465,103	+		PP_1282	0.64	+0.1
1,465,172	+		PP_1282	0.69	-3.5
1,465,208	+		PP_1282	0.72	+1.0
1,465,296	-		PP_1282	0.78	+1.9
1,465,469	+		PP_1282	0.90	+1.0
1,465,469	+		PP_1282	0.90	+1.5
1,465,785	+				+1.2
1,465,786	-				+1.1
1,465,786	-				-0.9
1,465,935	+		PP_1283	0.19	+0.7
1,465,935	+		PP_1283	0.19	+0.7
1,465,937	+		PP_1283	0.20	-1.8
1,465,937	+		PP_1283	0.20	+0.4
1,465,938	-		PP_1283	0.20	+1.0
1,465,938	-		PP_1283	0.20	+1.1
1,465,938	-		PP_1283	0.20	-1.8
1,466,067	+		PP_1283	0.28	+0.6
1,466,097	+		PP_1283	0.30	+0.8
1,466,098	-		PP_1283	0.30	+1.5
1,466,109	+		PP_1283	0.31	+0.7
1,466,109	+		PP_1283	0.31	-0.5
1,466,110	-		PP_1283	0.31	+0.1
1,466,169	+		PP_1283	0.34	-0.5
1,466,169	+		PP_1283	0.34	-0.4
1,466,170	-		PP_1283	0.35	-0.9
1,466,244	+		PP_1283	0.39	+1.7
1,466,245	-		PP_1283	0.39	+0.4
1,466,323	+		PP_1283	0.44	+0.0
1,466,323	+		PP_1283	0.44	-1.9
1,466,323	+		PP_1283	0.44	+0.3
1,466,324	-		PP_1283	0.44	+2.2
1,466,324	-		PP_1283	0.44	+0.5
1,466,361	+		PP_1283	0.47	+1.1
1,466,361	+		PP_1283	0.47	+0.2
1,466,362	-		PP_1283	0.47	-0.0
1,466,473	-		PP_1283	0.54	-0.6
1,466,473	-		PP_1283	0.54	+1.5
1,466,473	-		PP_1283	0.54	+1.6
1,466,512	+		PP_1283	0.56	+0.5
1,466,512	+		PP_1283	0.56	+4.3
1,466,513	-		PP_1283	0.57	+1.7
1,466,523	+		PP_1283	0.57	-1.0
1,466,757	+		PP_1283	0.72	+0.8
1,466,757	+		PP_1283	0.72	-0.5
1,466,757	+		PP_1283	0.72	-0.1
1,466,785	-		PP_1283	0.74	+1.0
1,466,935	+		PP_1283	0.84	-0.6
1,466,936	-		PP_1283	0.84	+1.2
1,466,936	-		PP_1283	0.84	-0.9
1,467,067	+				-0.5
1,467,067	+				-0.5
1,467,068	-				+2.1
1,467,069	+				-0.1
1,467,069	+				+0.8
1,467,069	+				-0.3
1,467,070	-				+0.5
1,467,170	+				-0.1
1,467,170	+				-0.1
1,467,253	+				+0.2
1,467,294	+				+0.6
1,467,295	-				+4.5
1,467,376	+		PP_1284	0.11	-1.6
1,467,377	-		PP_1284	0.11	-0.3
1,467,377	-		PP_1284	0.11	-0.8
1,467,377	-		PP_1284	0.11	-0.9
1,467,377	-		PP_1284	0.11	+0.2
1,467,520	+		PP_1284	0.21	+0.0
1,467,539	-		PP_1284	0.22	+0.1
1,467,959	+		PP_1284	0.50	-1.1
1,467,959	+		PP_1284	0.50	-1.4
1,468,094	-		PP_1284	0.60	-0.6
1,468,094	-		PP_1284	0.60	-0.2
1,468,094	-		PP_1284	0.60	+1.0
1,468,147	+		PP_1284	0.63	-0.1
1,468,148	-		PP_1284	0.63	+0.3