Strain Fitness in Pseudomonas putida KT2440 around PP_1196

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,370,143	-		PP_1195	0.55	-2.6
1,370,149	+		PP_1195	0.55	+0.2
1,370,149	+		PP_1195	0.55	+1.2
1,370,149	+		PP_1195	0.55	+1.0
1,370,149	+		PP_1195	0.55	+0.8
1,370,150	-		PP_1195	0.55	-0.3
1,370,208	+		PP_1195	0.58	+0.5
1,370,208	+		PP_1195	0.58	-0.2
1,370,209	-		PP_1195	0.58	+0.2
1,370,209	-		PP_1195	0.58	-0.5
1,370,209	-		PP_1195	0.58	+1.5
1,370,517	+		PP_1195	0.76	+1.8
1,370,518	-		PP_1195	0.76	-1.9
1,370,560	+		PP_1195	0.79	+0.8
1,370,561	-		PP_1195	0.79	+1.1
1,370,561	-		PP_1195	0.79	+0.5
1,370,561	-		PP_1195	0.79	-0.8
1,370,561	-		PP_1195	0.79	+0.0
1,370,561	-		PP_1195	0.79	-0.2
1,370,561	-		PP_1195	0.79	+0.0
1,370,561	-		PP_1195	0.79	+0.1
1,370,617	-		PP_1195	0.82	-0.5
1,370,838	+				+1.7
1,370,929	+				+0.5
1,370,929	+				+0.7
1,370,930	-				+0.3
1,370,930	-				+0.6
1,370,930	-				+0.2
1,370,938	+				+0.6
1,370,938	+				-2.3
1,370,965	+				-1.2
1,371,071	+		PP_1196	0.13	-0.4
1,371,092	-		PP_1196	0.16	+0.9
1,371,116	+		PP_1196	0.19	+2.4
1,371,116	+		PP_1196	0.19	-0.3
1,371,117	-		PP_1196	0.19	+1.3
1,371,117	-		PP_1196	0.19	-0.3
1,371,117	-		PP_1196	0.19	-0.2
1,371,117	-		PP_1196	0.19	+1.3
1,371,117	-		PP_1196	0.19	+0.6
1,371,137	+		PP_1196	0.22	+0.0
1,371,137	+		PP_1196	0.22	-1.9
1,371,138	-		PP_1196	0.22	+0.2
1,371,138	-		PP_1196	0.22	+0.1
1,371,158	+		PP_1196	0.25	+0.6
1,371,159	-		PP_1196	0.25	+0.3
1,371,166	+		PP_1196	0.26	-1.4
1,371,184	+		PP_1196	0.28	-0.1
1,371,184	+		PP_1196	0.28	+1.2
1,371,185	-		PP_1196	0.28	+0.5
1,371,281	+		PP_1196	0.41	+1.2
1,371,281	+		PP_1196	0.41	-0.2
1,371,281	+		PP_1196	0.41	-0.3
1,371,383	+		PP_1196	0.54	+0.5
1,371,384	-		PP_1196	0.54	+1.0
1,371,389	+		PP_1196	0.55	-0.4
1,371,390	-		PP_1196	0.55	+0.4
1,371,390	-		PP_1196	0.55	-0.4
1,371,409	-		PP_1196	0.58	+0.7
1,371,409	-		PP_1196	0.58	+2.7
1,371,499	-		PP_1196	0.70	-0.0
1,371,538	+		PP_1196	0.75	-1.6
1,371,557	+		PP_1196	0.77	+0.5
1,371,557	+		PP_1196	0.77	+0.8
1,371,557	+		PP_1196	0.77	+2.5
1,371,558	-		PP_1196	0.78	-1.3
1,371,607	+		PP_1196	0.84	+0.3
1,371,607	+		PP_1196	0.84	+1.6
1,371,607	+		PP_1196	0.84	+0.6
1,371,655	+				-0.1
1,371,656	+				-0.6
1,371,656	+				+2.0
1,371,657	-				-0.0
1,371,800	+				-0.5
1,371,801	-				+0.3
1,371,825	-				-1.4
1,371,825	-				+0.3
1,371,825	-				+0.3
1,372,112	-		PP_1197	0.23	-0.8
1,372,175	+		PP_1197	0.28	-0.7
1,372,352	+		PP_1197	0.42	-0.1
1,372,412	+		PP_1197	0.46	+0.0
1,372,412	+		PP_1197	0.46	-0.8
1,372,412	+		PP_1197	0.46	-0.3
1,372,413	-		PP_1197	0.46	+1.0
1,372,413	-		PP_1197	0.46	+0.9
1,372,413	-		PP_1197	0.46	-1.2
1,372,418	+		PP_1197	0.46	+0.1
1,372,418	+		PP_1197	0.46	-1.0
1,372,418	+		PP_1197	0.46	-0.9
1,372,419	-		PP_1197	0.47	+0.4
1,372,419	-		PP_1197	0.47	+0.2
1,372,419	-		PP_1197	0.47	+0.7
1,372,419	-		PP_1197	0.47	-0.8
1,372,419	-		PP_1197	0.47	-0.0
1,372,419	-		PP_1197	0.47	-0.2
1,372,514	+		PP_1197	0.54	+1.5
1,372,514	+		PP_1197	0.54	-1.2
1,372,514	+		PP_1197	0.54	-0.3
1,372,515	-		PP_1197	0.54	+0.4
1,372,565	+		PP_1197	0.58	+1.0
1,372,701	-		PP_1197	0.68	+0.5
1,372,706	+		PP_1197	0.68	-1.7
1,372,707	-				+0.1
1,372,707	-		PP_1197	0.68	+0.7
1,372,707	-		PP_1197	0.68	+0.7