Strain Fitness in Pseudomonas putida KT2440 around PP_1008

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,148,283	+				+0.8
1,148,283	+				-0.5
1,148,283	+				-1.2
1,148,284	-				+0.1
1,148,287	+				-1.8
1,148,287	+				-0.7
1,148,344	-		PP_1007	0.15	-0.8
1,148,347	-		PP_1007	0.15	-0.6
1,148,354	+		PP_1007	0.16	+0.8
1,148,355	-		PP_1007	0.16	-0.6
1,148,550	-		PP_1007	0.34	-0.4
1,148,571	+		PP_1007	0.36	+0.5
1,148,571	+		PP_1007	0.36	-0.7
1,148,571	+		PP_1007	0.36	-1.7
1,148,678	+		PP_1007	0.46	-1.5
1,148,678	+		PP_1007	0.46	-0.6
1,148,678	+		PP_1007	0.46	-0.5
1,148,678	+		PP_1007	0.46	-0.5
1,148,679	-		PP_1007	0.46	-0.7
1,148,794	+		PP_1007	0.57	-1.8
1,148,795	-		PP_1007	0.57	-0.6
1,148,795	-		PP_1007	0.57	-0.5
1,148,795	-		PP_1007	0.57	-0.5
1,148,795	-		PP_1007	0.57	-1.4
1,148,956	+		PP_1007	0.73	+1.2
1,148,956	+		PP_1007	0.73	-1.0
1,148,985	+		PP_1007	0.75	-1.4
1,148,985	+		PP_1007	0.75	-2.2
1,148,986	-		PP_1007	0.75	-0.5
1,148,986	-		PP_1007	0.75	-2.8
1,148,986	-		PP_1007	0.75	-1.6
1,148,986	-		PP_1007	0.75	-0.7
1,148,986	-		PP_1007	0.75	-1.7
1,149,192	-				+3.3
1,149,344	+		PP_1008	0.20	+3.7
1,149,344	+		PP_1008	0.20	+0.5
1,149,345	-		PP_1008	0.20	+1.7
1,149,836	-				-0.1
1,150,077	+				+0.6
1,150,077	+				-0.1
1,150,435	-		PP_1009	0.42	-1.3
1,150,464	+		PP_1009	0.45	-0.3
1,150,464	+		PP_1009	0.45	-1.6
1,150,465	-		PP_1009	0.45	-1.1
1,150,465	-		PP_1009	0.45	+1.4
1,150,609	-				+4.0
1,150,610	+		PP_1009	0.60	-0.1
1,150,610	+		PP_1009	0.60	-0.6
1,150,611	-		PP_1009	0.60	-1.3
1,150,611	-		PP_1009	0.60	-0.9
1,150,611	-		PP_1009	0.60	-0.5