Strain Fitness in Pseudomonas putida KT2440 around PP_1005

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,143,905	+		PP_1003	0.73	+2.4
1,143,906	-		PP_1003	0.73	-0.5
1,143,923	+		PP_1003	0.74	+1.5
1,143,927	+		PP_1003	0.74	-0.5
1,143,927	+		PP_1003	0.74	-0.1
1,143,927	+		PP_1003	0.74	+1.4
1,143,927	+		PP_1003	0.74	-1.5
1,143,928	-		PP_1003	0.74	-1.1
1,143,928	-		PP_1003	0.74	-2.1
1,143,972	+		PP_1003	0.78	-1.1
1,143,973	-		PP_1003	0.78	-0.9
1,143,973	-		PP_1003	0.78	-0.4
1,143,991	-		PP_1003	0.79	-0.5
1,144,084	-		PP_1003	0.85	+0.2
1,144,101	+		PP_1003	0.87	-0.7
1,144,101	+		PP_1003	0.87	+0.8
1,144,102	-		PP_1003	0.87	+0.6
1,144,143	+		PP_1003	0.89	-1.9
1,144,144	-		PP_1003	0.90	-0.0
1,144,260	+				-1.8
1,144,261	-				-0.6
1,144,269	+				+0.2
1,144,478	+		PP_1004	0.50	-0.1
1,144,479	-		PP_1004	0.50	-1.1
1,144,630	+		PP_1004	0.86	-0.3
1,144,631	-		PP_1004	0.87	+0.3
1,144,631	-		PP_1004	0.87	-2.7
1,144,677	+				+0.1
1,144,698	+				+0.3
1,144,698	+				-0.4
1,144,698	+				-0.6
1,144,699	-				+0.3
1,144,699	-				+0.3
1,144,699	-				-2.6
1,144,765	+				-1.3
1,145,190	+		PP_1005	0.76	-2.0
1,145,190	+		PP_1005	0.76	-3.2
1,145,191	-		PP_1005	0.76	+0.3
1,145,191	-		PP_1005	0.76	-0.7
1,145,191	-		PP_1005	0.76	-1.8
1,145,191	-		PP_1005	0.76	+0.2
1,145,191	-		PP_1005	0.76	-2.3
1,145,194	+		PP_1005	0.76	-3.3
1,145,195	-		PP_1005	0.77	+0.1
1,145,195	-		PP_1005	0.77	-0.8
1,145,361	-				-0.1
1,145,364	+				+1.5
1,145,365	-				+1.7
1,145,365	-				+0.3
1,145,365	-				+0.0
1,145,407	-				-0.5
1,145,407	-				+1.5
1,145,467	+				+1.6
1,145,498	-				+1.8
1,145,498	-				+2.7
1,145,575	-				+3.5
1,145,602	-				+1.5
1,145,602	-				-0.4
1,145,622	+				+2.1
1,145,623	-				+2.8
1,145,623	-				+0.7
1,145,623	-				+1.1
1,145,623	-				+3.6
1,145,623	-				+2.7
1,145,661	+				+1.3
1,145,661	+				+2.3
1,145,661	+				+2.8
1,145,661	+				+3.2
1,145,661	+				+3.4
1,145,662	-				+2.6
1,145,662	-				+1.7
1,145,662	-				+2.5
1,145,662	-				+1.1
1,145,688	+				+1.5
1,145,689	-				+2.2
1,145,713	+				+1.3
1,145,713	+				+3.3
1,145,714	-				+3.5
1,145,731	-				+1.5
1,145,731	-				+3.0
1,145,793	+		PP_1006	0.12	+3.0
1,145,793	+		PP_1006	0.12	+1.2
1,145,794	-		PP_1006	0.12	+2.6
1,145,822	+		PP_1006	0.13	+1.3
1,145,822	+		PP_1006	0.13	+2.2
1,145,822	+		PP_1006	0.13	+2.4
1,145,822	+		PP_1006	0.13	+1.4
1,145,880	+		PP_1006	0.16	+1.6
1,145,880	+		PP_1006	0.16	+1.5
1,145,880	+		PP_1006	0.16	+2.2
1,145,880	+		PP_1006	0.16	+2.9
1,145,880	+		PP_1006	0.16	-0.3
1,145,880	+		PP_1006	0.16	+1.2
1,145,880	+		PP_1006	0.16	+5.3
1,145,880	+		PP_1006	0.16	+1.7
1,145,881	-		PP_1006	0.16	+2.5
1,145,881	-		PP_1006	0.16	+3.4
1,145,881	-		PP_1006	0.16	+1.5
1,145,881	-		PP_1006	0.16	+3.0
1,145,881	-		PP_1006	0.16	+2.3
1,145,881	-		PP_1006	0.16	+1.7
1,145,881	-		PP_1006	0.16	+2.4
1,145,881	-		PP_1006	0.16	+1.3
1,145,886	+		PP_1006	0.16	+2.3
1,145,886	+		PP_1006	0.16	+3.0
1,145,886	+		PP_1006	0.16	+2.2
1,145,887	-		PP_1006	0.16	+2.9
1,145,887	-		PP_1006	0.16	+4.2
1,145,907	+		PP_1006	0.17	+1.2
1,145,907	+		PP_1006	0.17	+2.1
1,146,054	+		PP_1006	0.22	+2.0
1,146,054	+		PP_1006	0.22	+2.4
1,146,063	+		PP_1006	0.23	+2.4
1,146,063	+		PP_1006	0.23	+1.9
1,146,064	-		PP_1006	0.23	+3.6
1,146,064	-		PP_1006	0.23	+2.8
1,146,148	+		PP_1006	0.26	+2.9
1,146,149	-		PP_1006	0.26	+2.1
1,146,198	+		PP_1006	0.28	+3.0
1,146,198	+		PP_1006	0.28	+2.4
1,146,198	+		PP_1006	0.28	+1.4
1,146,198	+		PP_1006	0.28	+2.7
1,146,198	+		PP_1006	0.28	+3.0
1,146,199	-		PP_1006	0.28	+1.5
1,146,199	-		PP_1006	0.28	+2.3
1,146,199	-		PP_1006	0.28	+0.8
1,146,199	-		PP_1006	0.28	+2.7
1,146,199	-		PP_1006	0.28	+2.0
1,146,237	+		PP_1006	0.29	+1.5
1,146,238	-		PP_1006	0.30	+3.3
1,146,238	-		PP_1006	0.30	+1.9
1,146,238	-		PP_1006	0.30	+0.8
1,146,255	+		PP_1006	0.30	+1.8
1,146,255	+		PP_1006	0.30	+2.6
1,146,256	-		PP_1006	0.30	+3.5
1,146,256	-		PP_1006	0.30	+4.1
1,146,256	-		PP_1006	0.30	+3.4
1,146,274	-		PP_1006	0.31	+2.7
1,146,274	-		PP_1006	0.31	+2.5