Strain Fitness in Pseudomonas putida KT2440 around PP_0994

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,131,999	+		PP_0992	0.62	+1.2
1,131,999	+		PP_0992	0.62	+1.7
1,132,038	-		PP_0992	0.67	-1.4
1,132,038	-		PP_0992	0.67	+1.4
1,132,200	+		PP_0992	0.86	-0.3
1,132,200	+		PP_0992	0.86	-0.0
1,132,200	+		PP_0992	0.86	+1.6
1,132,201	-		PP_0992	0.87	+0.6
1,132,201	-		PP_0992	0.87	+0.5
1,132,201	-		PP_0992	0.87	-0.2
1,132,340	+				+0.7
1,132,340	+				+0.3
1,132,340	+				-0.1
1,132,340	+				-1.4
1,132,340	+				-0.2
1,132,340	+				+0.1
1,132,341	-				+1.7
1,132,341	-				+0.0
1,132,341	-				+0.3
1,132,647	+				-2.6
1,132,668	-				-0.1
1,132,668	-				-1.8
1,132,684	-				+0.6
1,132,684	-				-1.1
1,132,761	+				-1.1
1,132,761	+				-0.4
1,132,762	-				+0.8
1,132,762	-				+4.2
1,132,762	-				+0.3
1,132,814	+				-0.3
1,132,825	+				+0.1
1,132,825	+				-0.8
1,132,826	-				-0.1
1,132,826	-				-1.8
1,132,852	-				+0.1
1,132,933	+				-0.9
1,132,933	+				-0.6
1,132,934	-				-3.8
1,132,967	+		PP_0994	0.15	-0.5
1,132,967	+		PP_0994	0.15	-0.2
1,132,967	+		PP_0994	0.15	-1.4
1,132,967	+		PP_0994	0.15	-1.5
1,132,967	+		PP_0994	0.15	-0.6
1,132,968	-		PP_0994	0.15	+0.5
1,132,968	-		PP_0994	0.15	+0.4
1,132,968	-		PP_0994	0.15	+0.8
1,132,968	-		PP_0994	0.15	+0.6
1,133,036	+		PP_0994	0.28	-1.1
1,133,037	-		PP_0994	0.28	-1.9
1,133,066	-		PP_0994	0.33	-0.1
1,133,363	+				-0.4
1,133,364	-		PP_0994	0.89	-0.5
1,133,536	+		PP_0995	0.19	-2.6
1,133,536	+		PP_0995	0.19	-4.0
1,133,536	+		PP_0995	0.19	+0.8
1,133,536	+		PP_0995	0.19	-2.1
1,133,537	-		PP_0995	0.19	-1.7
1,133,537	-		PP_0995	0.19	-0.7
1,133,539	+		PP_0995	0.19	-1.7
1,133,540	-		PP_0995	0.20	-1.4
1,133,540	-		PP_0995	0.20	-2.2
1,133,540	-		PP_0995	0.20	-4.0
1,133,563	+		PP_0995	0.23	-4.2
1,133,797	+		PP_0995	0.60	-1.4
1,133,812	+		PP_0995	0.62	-2.7
1,133,987	+		PP_0995	0.89	-2.1
1,134,053	+				+0.0
1,134,054	-				-1.0
1,134,054	-				+0.6
1,134,135	-				+1.3
1,134,164	+				+0.7
1,134,164	+				-1.8
1,134,252	-				-0.0
1,134,294	+		PP_0996	0.13	-0.3
1,134,295	-		PP_0996	0.13	+0.1
1,134,295	-		PP_0996	0.13	+1.2
1,134,295	-		PP_0996	0.13	+0.0
1,134,359	-		PP_0996	0.19	-0.8
1,134,359	-		PP_0996	0.19	+0.1
1,134,420	+		PP_0996	0.24	+0.7
1,134,421	-		PP_0996	0.24	-0.3
1,134,421	-		PP_0996	0.24	+0.4