Strain Fitness in Pseudomonas putida KT2440 around PP_0858

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0857 and PP_0858 are separated by 151 nucleotidesPP_0858 and PP_0859 overlap by 13 nucleotidesPP_0859 and PP_0860 are separated by 124 nucleotides PP_0857: PP_0857 - GTPase Der, at 991,379 to 992,842 _0857 PP_0858: PP_0858 - putative methionine/glutamine aminotransferase, at 992,994 to 994,142 _0858 PP_0859: PP_0859 - putative ketoglutaramate omega-amidase, at 994,130 to 994,921 _0859 PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595 _0860 Position (kb) 992 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 992.908 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.974 kb on - strandat 992.974 kb on - strandat 992.974 kb on - strandat 993.163 kb on - strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.261 kb on - strand, within PP_0858at 993.284 kb on + strand, within PP_0858at 993.285 kb on - strand, within PP_0858at 993.357 kb on + strand, within PP_0858at 993.358 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.563 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.614 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.688 kb on - strand, within PP_0858at 993.765 kb on + strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.837 kb on - strand, within PP_0858at 993.837 kb on - strand, within PP_0858at 993.859 kb on - strand, within PP_0858at 993.914 kb on + strand, within PP_0858at 993.933 kb on + strand, within PP_0858at 993.933 kb on + strand, within PP_0858at 993.934 kb on - strandat 993.934 kb on - strand, within PP_0858at 993.952 kb on - strand, within PP_0858at 994.044 kb on + strandat 994.045 kb on - strandat 994.076 kb on - strandat 994.129 kb on + strandat 994.145 kb on - strandat 994.145 kb on - strandat 994.211 kb on + strand, within PP_0859at 994.211 kb on + strand, within PP_0859at 994.280 kb on - strand, within PP_0859at 994.338 kb on - strand, within PP_0859at 994.466 kb on + strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.634 kb on + strand, within PP_0859at 994.635 kb on - strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.713 kb on - strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.761 kb on - strand, within PP_0859at 994.843 kb on - strandat 994.843 kb on - strandat 994.903 kb on + strandat 994.904 kb on - strandat 995.036 kb on + strandat 995.036 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.051 kb on - strandat 995.051 kb on - strandat 995.091 kb on + strandat 995.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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992,908 + -1.4
992,973 + +0.9
992,973 + -0.0
992,973 + +0.8
992,973 + -0.6
992,973 + -0.7
992,973 + -0.7
992,974 - -0.9
992,974 - +1.8
992,974 - +0.3
993,163 - PP_0858 0.15 +0.5
993,225 + PP_0858 0.20 -0.3
993,225 + PP_0858 0.20 -0.7
993,226 - PP_0858 0.20 +1.3
993,226 - PP_0858 0.20 +1.0
993,226 - PP_0858 0.20 +0.4
993,226 - PP_0858 0.20 +3.0
993,260 + PP_0858 0.23 +0.7
993,260 + PP_0858 0.23 -0.9
993,261 - PP_0858 0.23 +1.8
993,284 + PP_0858 0.25 +0.2
993,285 - PP_0858 0.25 -0.5
993,357 + PP_0858 0.32 -1.0
993,358 - PP_0858 0.32 -0.3
993,395 - PP_0858 0.35 +1.1
993,395 - PP_0858 0.35 +1.3
993,549 - PP_0858 0.48 -0.6
993,549 - PP_0858 0.48 +1.4
993,563 + PP_0858 0.50 -0.8
993,567 + PP_0858 0.50 +0.0
993,567 + PP_0858 0.50 -3.1
993,568 - PP_0858 0.50 +0.3
993,568 - PP_0858 0.50 +0.9
993,588 + PP_0858 0.52 -0.2
993,588 + PP_0858 0.52 +1.0
993,589 - PP_0858 0.52 +0.4
993,589 - PP_0858 0.52 +1.2
993,603 + PP_0858 0.53 +0.2
993,603 + PP_0858 0.53 +0.5
993,614 - PP_0858 0.54 +1.3
993,649 - PP_0858 0.57 +1.6
993,649 - PP_0858 0.57 +0.2
993,649 - PP_0858 0.57 +1.3
993,649 - PP_0858 0.57 +1.5
993,649 - PP_0858 0.57 +1.8
993,687 + PP_0858 0.60 -1.2
993,687 + PP_0858 0.60 -0.2
993,688 - PP_0858 0.60 +1.4
993,765 + PP_0858 0.67 -1.9
993,766 - PP_0858 0.67 +3.7
993,766 - PP_0858 0.67 +1.1
993,836 + PP_0858 0.73 -1.7
993,836 + PP_0858 0.73 -0.1
993,837 - PP_0858 0.73 +1.8
993,837 - PP_0858 0.73 +1.6
993,859 - PP_0858 0.75 +1.1
993,914 + PP_0858 0.80 -0.8
993,933 + PP_0858 0.82 -0.5
993,933 + PP_0858 0.82 -2.4
993,934 - +1.1
993,934 - PP_0858 0.82 +2.3
993,952 - PP_0858 0.83 -0.4
994,044 + -0.6
994,045 - +0.7
994,076 - +1.4
994,129 + +2.2
994,145 - -0.8
994,145 - +2.8
994,211 + PP_0859 0.10 +1.3
994,211 + PP_0859 0.10 +0.8
994,280 - PP_0859 0.19 -0.1
994,338 - PP_0859 0.26 +0.6
994,466 + PP_0859 0.42 +0.1
994,467 - PP_0859 0.43 -0.2
994,467 - PP_0859 0.43 -0.1
994,511 + PP_0859 0.48 +0.6
994,511 + PP_0859 0.48 +0.8
994,578 - PP_0859 0.57 +0.9
994,578 - PP_0859 0.57 +0.6
994,634 + PP_0859 0.64 +0.8
994,635 - PP_0859 0.64 +1.6
994,712 + PP_0859 0.73 +0.5
994,712 + PP_0859 0.73 -0.9
994,713 - PP_0859 0.74 +2.1
994,760 + PP_0859 0.80 +0.8
994,760 + PP_0859 0.80 +0.2
994,761 - PP_0859 0.80 +0.8
994,843 - +1.6
994,843 - +0.8
994,903 + -0.6
994,904 - +1.8
995,036 + -0.0
995,036 + -2.1
995,050 + +0.5
995,050 + +0.1
995,050 + +1.7
995,050 + -0.9
995,050 + -0.6
995,051 - -1.6
995,051 - +2.0
995,091 + +1.4
995,092 - -1.0

Or see this region's nucleotide sequence