Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0808 and PP_0809 are separated by 456 nucleotides PP_0809 and PP_0812 are separated by 559 nucleotides
PP_0808: PP_0808 - Flavohemoprotein, at 947,524 to 948,702
_0808
PP_0809: PP_0809 - disulfide bond formation protein B, at 949,159 to 949,665
_0809
PP_0812: PP_0812 - cytochrome bo terminal oxidase subunit II, at 950,225 to 951,166
_0812
Position (kb) 949
950 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 948.220 kb on + strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.249 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.586 kb on + strand at 948.586 kb on + strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.706 kb on - strand at 948.706 kb on - strand at 948.750 kb on + strand at 948.750 kb on + strand at 948.751 kb on - strand at 948.751 kb on - strand at 948.785 kb on - strand at 948.796 kb on + strand at 948.814 kb on + strand at 948.815 kb on - strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.824 kb on + strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.864 kb on - strand at 948.864 kb on - strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.869 kb on + strand at 948.869 kb on + strand at 948.870 kb on - strand at 948.907 kb on + strand at 948.907 kb on + strand at 948.908 kb on - strand at 948.908 kb on - strand at 948.918 kb on + strand at 949.102 kb on + strand at 949.102 kb on + strand at 949.139 kb on - strand at 949.249 kb on + strand, within PP_0809 at 949.249 kb on + strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.303 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.642 kb on + strand at 949.642 kb on + strand at 949.642 kb on + strand at 949.643 kb on - strand at 949.643 kb on - strand at 949.663 kb on + strand at 949.663 kb on + strand at 949.664 kb on - strand at 949.778 kb on + strand at 949.778 kb on + strand at 949.778 kb on + strand at 949.827 kb on - strand at 949.891 kb on + strand at 949.891 kb on + strand at 950.050 kb on + strand at 950.050 kb on + strand at 950.050 kb on + strand at 950.075 kb on + strand at 950.075 kb on + strand at 950.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 948,220 + PP_0808 0.59 +0.2 948,221 - PP_0808 0.59 +1.2 948,221 - PP_0808 0.59 +0.2 948,249 + PP_0808 0.61 -1.9 948,481 + PP_0808 0.81 -0.5 948,481 + PP_0808 0.81 +0.2 948,481 + PP_0808 0.81 -0.2 948,481 + PP_0808 0.81 +3.4 948,481 + PP_0808 0.81 +0.3 948,481 + PP_0808 0.81 -1.0 948,482 - PP_0808 0.81 +0.3 948,482 - PP_0808 0.81 -1.2 948,482 - PP_0808 0.81 -0.3 948,482 - PP_0808 0.81 -0.5 948,482 - PP_0808 0.81 -0.9 948,482 - PP_0808 0.81 -1.4 948,482 - PP_0808 0.81 +2.0 948,488 - PP_0808 0.82 -1.8 948,488 - PP_0808 0.82 -1.4 948,488 - PP_0808 0.82 +0.1 948,488 - PP_0808 0.82 -0.5 948,586 + -1.2 948,586 + -0.6 948,587 - -0.2 948,587 - -0.7 948,587 - -0.3 948,705 + +0.8 948,705 + +0.1 948,705 + +0.0 948,706 - -2.6 948,706 - -1.7 948,750 + -1.6 948,750 + -2.0 948,751 - -0.6 948,751 - +0.5 948,785 - -2.3 948,796 + -0.6 948,814 + +0.6 948,815 - -2.2 948,822 + +0.0 948,822 + -0.3 948,822 + -0.0 948,823 - -2.8 948,823 - -2.5 948,823 - -1.8 948,823 - -1.1 948,823 - -2.5 948,824 + -0.0 948,825 - -1.6 948,825 - -2.1 948,825 - -1.1 948,863 + -1.1 948,863 + -1.7 948,863 + -0.7 948,863 + -1.3 948,863 + -1.2 948,864 - -1.6 948,864 - -2.6 948,865 + -2.5 948,865 + +0.3 948,865 + -1.1 948,865 + -1.4 948,866 - -1.5 948,866 - -1.8 948,866 - -2.6 948,866 - -2.5 948,866 - -1.9 948,867 + -1.8 948,867 + +0.4 948,867 + -2.5 948,867 + -2.0 948,867 + -1.5 948,867 + -0.7 948,867 + +0.0 948,868 - -1.5 948,868 - -0.5 948,868 - -2.3 948,868 - -1.4 948,868 - -2.4 948,868 - -1.6 948,868 - -1.7 948,868 - -2.6 948,868 - -3.6 948,869 + +0.1 948,869 + -1.2 948,870 - -0.7 948,907 + +0.2 948,907 + +0.0 948,908 - -3.2 948,908 - -0.0 948,918 + -0.4 949,102 + +1.1 949,102 + +1.0 949,139 - -1.8 949,249 + PP_0809 0.18 -0.0 949,249 + PP_0809 0.18 -3.0 949,250 - PP_0809 0.18 -1.6 949,250 - PP_0809 0.18 -4.5 949,250 - PP_0809 0.18 -4.0 949,303 + PP_0809 0.28 -3.1 949,435 + PP_0809 0.54 -1.9 949,435 + PP_0809 0.54 -3.4 949,435 + PP_0809 0.54 -2.1 949,435 + PP_0809 0.54 -1.8 949,435 + PP_0809 0.54 -3.0 949,435 + PP_0809 0.54 -3.8 949,435 + PP_0809 0.54 -3.6 949,435 + PP_0809 0.54 -2.9 949,435 + PP_0809 0.54 -3.6 949,435 + PP_0809 0.54 -3.2 949,436 - PP_0809 0.55 -3.3 949,436 - PP_0809 0.55 -3.9 949,436 - PP_0809 0.55 -3.1 949,436 - PP_0809 0.55 -4.0 949,436 - PP_0809 0.55 -4.1 949,437 + PP_0809 0.55 -3.6 949,437 + PP_0809 0.55 -3.2 949,437 + PP_0809 0.55 -3.6 949,437 + PP_0809 0.55 -3.0 949,438 - PP_0809 0.55 -3.0 949,438 - PP_0809 0.55 -4.1 949,438 - PP_0809 0.55 -3.6 949,438 - PP_0809 0.55 -0.6 949,438 - PP_0809 0.55 -4.0 949,438 - PP_0809 0.55 -5.1 949,439 + PP_0809 0.55 -3.3 949,439 + PP_0809 0.55 -4.3 949,439 + PP_0809 0.55 -3.8 949,439 + PP_0809 0.55 -3.9 949,440 - PP_0809 0.55 -3.2 949,440 - PP_0809 0.55 -3.0 949,440 - PP_0809 0.55 -2.4 949,642 + +0.9 949,642 + -1.7 949,642 + -0.5 949,643 - -2.8 949,643 - -2.6 949,663 + +0.1 949,663 + +0.4 949,664 - -1.3 949,778 + -2.6 949,778 + -1.7 949,778 + -1.1 949,827 - +0.4 949,891 + -0.6 949,891 + -2.3 950,050 + +1.0 950,050 + +0.2 950,050 + -0.9 950,075 + +0.4 950,075 + +0.4 950,075 + -1.3
Or see this region's nucleotide sequence