Strain Fitness in Pseudomonas putida KT2440 around PP_0782

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
897,979	-				+1.1
898,329	-		PP_0781	0.63	-0.3
898,329	-		PP_0781	0.63	-1.5
898,329	-		PP_0781	0.63	+0.7
898,483	+				+1.6
898,901	-				+1.0
898,935	+				-0.1
898,935	+				-1.0
899,165	+		PP_0782	0.38	+1.4
899,165	+		PP_0782	0.38	+1.2
899,295	+		PP_0782	0.59	+0.9
899,296	-		PP_0782	0.59	-0.1
899,299	+		PP_0782	0.60	+0.0
899,392	+		PP_0782	0.75	+0.3
899,393	-		PP_0782	0.75	+1.7
899,409	-		PP_0782	0.78	+1.6
899,522	+				-0.5
899,523	-				-1.5
899,547	-				-0.0
899,600	+				-0.2
899,601	-				-0.4
899,778	-				-1.0
899,781	+				-0.0
899,781	+				+0.6
899,871	-				+0.2
899,916	+				+0.4
900,008	+		PP_0784	0.19	-0.7
900,036	-		PP_0784	0.23	-0.6
900,128	-		PP_0784	0.38	-0.1
900,131	+		PP_0784	0.39	-2.2
900,215	-		PP_0784	0.52	+2.4
900,323	-		PP_0784	0.70	-0.7
900,357	+		PP_0784	0.75	+0.2
900,358	-		PP_0784	0.76	+0.7
900,453	+				-0.4
900,453	+				+0.4
900,453	+				-0.5
900,453	+				+0.5
900,454	-				-0.6
900,454	-				-0.0
900,454	-				-0.3
900,454	-				-0.6
900,456	+				+0.9
900,488	+				+1.1
900,489	-				+0.5
900,507	-				+1.0