Strain Fitness in Pseudomonas putida KT2440 around PP_0744

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0743 and PP_0744 are separated by 13 nucleotidesPP_0744 and PP_0745 are separated by 35 nucleotides PP_0743: PP_0743 - conserved protein with NAD(P)-binding Rossmann-fold domain, at 861,948 to 862,853 _0743 PP_0744: PP_0744 - Ferrochelatase, at 862,867 to 863,883 _0744 PP_0745: PP_0745 - putative uracil permease, at 863,919 to 865,184 _0745 Position (kb) 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 861.867 kb on - strandat 861.867 kb on - strandat 861.909 kb on + strandat 861.916 kb on - strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 862.108 kb on + strand, within PP_0743at 862.108 kb on + strand, within PP_0743at 862.109 kb on - strand, within PP_0743at 862.109 kb on - strandat 862.109 kb on - strand, within PP_0743at 862.300 kb on - strand, within PP_0743at 862.373 kb on + strand, within PP_0743at 862.374 kb on - strand, within PP_0743at 862.417 kb on + strand, within PP_0743at 862.417 kb on + strand, within PP_0743at 862.418 kb on - strand, within PP_0743at 862.426 kb on + strand, within PP_0743at 862.427 kb on - strand, within PP_0743at 862.427 kb on - strand, within PP_0743at 862.550 kb on + strand, within PP_0743at 862.551 kb on - strand, within PP_0743at 862.551 kb on - strand, within PP_0743at 862.552 kb on + strand, within PP_0743at 862.553 kb on - strand, within PP_0743at 862.553 kb on - strand, within PP_0743at 862.611 kb on + strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.613 kb on + strand, within PP_0743at 862.613 kb on + strand, within PP_0743at 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.982 kb on - strandat 864.248 kb on + strand, within PP_0745at 864.248 kb on + strand, within PP_0745at 864.249 kb on - strand, within PP_0745at 864.289 kb on + strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.328 kb on + strand, within PP_0745at 864.328 kb on + strandat 864.328 kb on + strand, within PP_0745at 864.329 kb on - strand, within PP_0745at 864.368 kb on + strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.728 kb on - strand, within PP_0745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
861,867 - -0.3
861,867 - -0.6
861,909 + -2.2
861,916 - +2.1
861,953 + +0.0
861,953 + +0.9
861,953 + +1.5
861,953 + +0.2
861,953 + +0.5
861,953 + -0.8
861,954 - -0.3
861,954 - -1.6
861,954 - +1.4
861,954 - -2.0
861,954 - +1.1
861,954 - +0.5
861,954 - -1.9
861,954 - -0.1
861,954 - -0.3
861,954 - -0.3
861,954 - +0.6
861,954 - -0.5
861,955 + +1.4
861,955 + -0.4
861,955 + -1.0
861,955 + +0.8
861,955 + +1.4
861,955 + -0.7
861,955 + +0.3
861,955 + +0.3
861,955 + +0.4
861,956 - -0.7
861,956 - -1.9
861,956 - -2.6
861,956 - +1.1
861,956 - -0.8
862,108 + PP_0743 0.18 -1.2
862,108 + PP_0743 0.18 -0.1
862,109 - PP_0743 0.18 -0.6
862,109 - -0.8
862,109 - PP_0743 0.18 -0.0
862,300 - PP_0743 0.39 +1.7
862,373 + PP_0743 0.47 -1.6
862,374 - PP_0743 0.47 -0.8
862,417 + PP_0743 0.52 -0.6
862,417 + PP_0743 0.52 -0.2
862,418 - PP_0743 0.52 +0.9
862,426 + PP_0743 0.53 -0.3
862,427 - PP_0743 0.53 +1.9
862,427 - PP_0743 0.53 +1.6
862,550 + PP_0743 0.66 +0.0
862,551 - PP_0743 0.67 +0.4
862,551 - PP_0743 0.67 -0.1
862,552 + PP_0743 0.67 +0.0
862,553 - PP_0743 0.67 +0.7
862,553 - PP_0743 0.67 -0.1
862,611 + PP_0743 0.73 -0.5
862,612 - PP_0743 0.73 -2.6
862,612 - PP_0743 0.73 -1.1
862,612 - PP_0743 0.73 +0.2
862,612 - PP_0743 0.73 +1.5
862,612 - PP_0743 0.73 +1.0
862,613 + PP_0743 0.73 +1.0
862,613 + PP_0743 0.73 -0.3
863,865 + -0.9
863,865 + -0.9
863,865 + -0.9
863,865 + -2.0
863,922 + -1.8
863,922 + +0.1
863,922 + +0.2
863,922 + +0.1
863,923 - -3.1
863,923 - -1.0
863,923 - -0.5
863,923 - -1.9
863,923 - +0.8
863,923 - -0.7
863,982 - -3.3
864,248 + PP_0745 0.26 -1.8
864,248 + PP_0745 0.26 +1.2
864,249 - PP_0745 0.26 -0.5
864,289 + PP_0745 0.29 -1.0
864,290 - PP_0745 0.29 -0.2
864,290 - PP_0745 0.29 -1.1
864,290 - PP_0745 0.29 -0.7
864,328 + PP_0745 0.32 +0.4
864,328 + +0.9
864,328 + PP_0745 0.32 -2.2
864,329 - PP_0745 0.32 -0.4
864,368 + PP_0745 0.35 -2.0
864,422 - PP_0745 0.40 -0.5
864,422 - PP_0745 0.40 -0.7
864,728 - PP_0745 0.64 +1.0

Or see this region's nucleotide sequence