Strain Fitness in Pseudomonas putida KT2440 around PP_0741

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
858,832	+				-1.5
858,832	+				-0.3
858,832	+				+0.4
858,832	+				+1.8
858,832	+				-0.1
858,833	-				-0.9
858,838	+				-1.7
858,838	+				+1.2
858,838	+				+1.5
858,838	+				+0.2
858,839	-				+0.6
859,039	+		PP_0740	0.25	-3.7
859,040	-		PP_0740	0.25	+0.5
859,136	-		PP_0740	0.36	-0.2
859,153	+		PP_0740	0.38	-0.6
859,154	-		PP_0740	0.38	-2.3
859,154	-		PP_0740	0.38	+0.3
859,154	-		PP_0740	0.38	-1.1
859,154	-		PP_0740	0.38	+0.8
859,154	-		PP_0740	0.38	+0.6
859,230	-		PP_0740	0.46	-0.7
859,230	-		PP_0740	0.46	+0.5
859,298	+		PP_0740	0.54	+0.4
859,298	+		PP_0740	0.54	-0.1
859,299	-		PP_0740	0.54	-0.7
859,299	-		PP_0740	0.54	+1.1
859,749	+				+0.2
859,750	-				+1.0
859,750	-				+0.7
859,750	-				+0.1
859,750	-				+1.8
859,767	+				+1.1
859,817	+		PP_0741	0.12	-2.4
859,817	+		PP_0741	0.12	-0.6
859,818	-		PP_0741	0.12	+1.2
859,927	+		PP_0741	0.23	-0.1
859,928	-		PP_0741	0.23	+0.3
860,082	+		PP_0741	0.39	-1.3
860,082	+		PP_0741	0.39	-1.1
860,083	-		PP_0741	0.39	-0.1
860,088	+		PP_0741	0.40	-0.1
860,089	-		PP_0741	0.40	-0.3
860,158	-		PP_0741	0.47	-0.8
860,174	+		PP_0741	0.49	+0.5
860,174	+		PP_0741	0.49	+0.4
860,222	+		PP_0741	0.54	-0.9
860,222	+		PP_0741	0.54	-0.3
860,222	+		PP_0741	0.54	-0.1
860,223	-		PP_0741	0.54	-0.7
860,262	+		PP_0741	0.58	-1.2
860,263	-		PP_0741	0.58	+0.4
860,263	-		PP_0741	0.58	-1.4
860,263	-		PP_0741	0.58	-1.3
860,401	-		PP_0741	0.72	+0.4
860,401	-		PP_0741	0.72	-0.4
860,401	-		PP_0741	0.72	+0.6
860,599	-				-1.2
860,744	-				-0.2
860,753	-				-1.7
860,763	+				-1.2
860,765	+				-1.2
860,766	-				+1.0
860,766	-				+1.2
860,766	-				-1.2
860,869	+				+0.7
860,869	+				+0.8
860,870	-				+0.8
860,870	-				-1.0
860,870	-				-0.4
860,870	-				-0.2
860,870	-				+0.9
860,916	-		PP_0742	0.14	+0.6
860,929	+		PP_0742	0.16	-0.3
860,930	-		PP_0742	0.16	-0.4
860,930	-		PP_0742	0.16	+0.8
860,930	-		PP_0742	0.16	+1.7
861,170	+		PP_0742	0.40	+0.7
861,209	+		PP_0742	0.44	+0.5
861,210	-		PP_0742	0.44	+0.2
861,210	-		PP_0742	0.44	+0.6
861,310	+		PP_0742	0.54	+0.5
861,353	-		PP_0742	0.59	-0.3
861,482	+		PP_0742	0.72	+0.2
861,482	+		PP_0742	0.72	-3.1
861,482	+		PP_0742	0.72	-0.5
861,482	+		PP_0742	0.72	-0.8
861,482	+		PP_0742	0.72	+0.2
861,482	+		PP_0742	0.72	+0.4
861,483	-		PP_0742	0.72	-0.3
861,483	-		PP_0742	0.72	+2.3
861,500	-		PP_0742	0.73	+0.9
861,500	-		PP_0742	0.73	-0.7
861,505	+		PP_0742	0.74	+1.9
861,505	+		PP_0742	0.74	-2.2
861,506	-		PP_0742	0.74	+1.0
861,506	-		PP_0742	0.74	+0.6
861,506	-		PP_0742	0.74	+1.5
861,506	-		PP_0742	0.74	-0.8
861,506	-		PP_0742	0.74	+0.6
861,506	-		PP_0742	0.74	+0.1
861,592	+		PP_0742	0.83	-1.1
861,593	-		PP_0742	0.83	+1.9