Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0726 and PP_0727 overlap by 4 nucleotides PP_0727 and PP_0728 overlap by 4 nucleotides
PP_0726: PP_0726 - Transferase, at 843,518 to 844,243
_0726
PP_0727: PP_0727 - conserved protein of unknown function, at 844,240 to 844,842
_0727
PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008
_0728
Position (kb) 844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 843.241 kb on - strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.288 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.314 kb on + strand at 843.355 kb on - strand at 843.355 kb on - strand at 843.459 kb on - strand at 843.480 kb on + strand at 843.492 kb on + strand at 843.531 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.545 kb on + strand at 843.636 kb on - strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.742 kb on - strand at 843.742 kb on - strand, within PP_0726 at 843.742 kb on - strand, within PP_0726 at 843.784 kb on + strand, within PP_0726 at 843.806 kb on + strand, within PP_0726 at 843.879 kb on + strand, within PP_0726 at 843.892 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.908 kb on - strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.952 kb on - strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 844.039 kb on - strand, within PP_0726 at 844.142 kb on + strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.166 kb on + strand, within PP_0726 at 844.167 kb on - strand, within PP_0726 at 844.202 kb on + strand at 844.202 kb on + strand at 844.298 kb on - strand at 844.329 kb on + strand, within PP_0727 at 844.349 kb on + strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.384 kb on + strand, within PP_0727 at 844.385 kb on - strand, within PP_0727 at 844.387 kb on + strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.422 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.481 kb on - strand at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.529 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.657 kb on - strand, within PP_0727 at 844.691 kb on - strand, within PP_0727 at 844.725 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.855 kb on - strand at 844.855 kb on - strand at 844.855 kb on - strand at 844.856 kb on + strand at 844.899 kb on + strand at 844.900 kb on - strand at 844.931 kb on + strand at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 845.076 kb on + strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.179 kb on - strand, within PP_0728 at 845.217 kb on + strand, within PP_0728 at 845.349 kb on + strand, within PP_0728 at 845.349 kb on + strand, within PP_0728 at 845.350 kb on - strand, within PP_0728 at 845.350 kb on - strand, within PP_0728 at 845.367 kb on + strand, within PP_0728 at 845.368 kb on - strand, within PP_0728 at 845.401 kb on + strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.407 kb on + strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.432 kb on + strand, within PP_0728 at 845.475 kb on - strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.527 kb on - strand, within PP_0728 at 845.562 kb on + strand, within PP_0728 at 845.563 kb on - strand, within PP_0728 at 845.584 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.627 kb on - strand, within PP_0728 at 845.627 kb on - strand at 845.630 kb on + strand, within PP_0728 at 845.672 kb on + strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.755 kb on - strand, within PP_0728 at 845.757 kb on + strand, within PP_0728 at 845.758 kb on - strand, within PP_0728 at 845.784 kb on + strand, within PP_0728 at 845.784 kb on + strand, within PP_0728 at 845.796 kb on + strand, within PP_0728 at 845.796 kb on + strand, within PP_0728
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 843,241 - -0.7 843,275 + -0.2 843,275 + +0.6 843,275 + -0.7 843,276 - -0.8 843,276 - -1.5 843,276 - +0.1 843,276 - -0.0 843,288 + -0.7 843,312 + -0.4 843,312 + +0.7 843,312 + +0.1 843,312 + +1.9 843,312 + -0.6 843,312 + +0.2 843,312 + +1.5 843,312 + +0.7 843,313 - +0.0 843,313 - -1.2 843,313 - -0.1 843,313 - -1.1 843,313 - +1.9 843,313 - +0.7 843,314 + +0.1 843,355 - +0.3 843,355 - -0.2 843,459 - +1.7 843,480 + +0.5 843,492 + +2.6 843,531 + -0.3 843,543 + -0.9 843,543 + -0.5 843,543 + +0.9 843,543 + -0.6 843,545 + +0.9 843,636 - PP_0726 0.16 +0.9 843,741 + PP_0726 0.31 +1.5 843,741 + PP_0726 0.31 +0.2 843,741 + PP_0726 0.31 -0.3 843,742 - +1.1 843,742 - PP_0726 0.31 +0.9 843,742 - PP_0726 0.31 -0.3 843,784 + PP_0726 0.37 +1.4 843,806 + PP_0726 0.40 -0.2 843,879 + PP_0726 0.50 -0.9 843,892 + PP_0726 0.52 -0.2 843,907 + PP_0726 0.54 +0.8 843,907 + PP_0726 0.54 -1.8 843,907 + PP_0726 0.54 -1.8 843,908 - PP_0726 0.54 -0.1 843,911 + PP_0726 0.54 -1.9 843,911 + PP_0726 0.54 +3.8 843,911 + PP_0726 0.54 +1.0 843,912 - PP_0726 0.54 +0.7 843,912 - PP_0726 0.54 -0.6 843,920 + PP_0726 0.55 -0.7 843,920 + PP_0726 0.55 -0.9 843,920 + PP_0726 0.55 +1.6 843,923 + PP_0726 0.56 +0.6 843,923 + PP_0726 0.56 -0.5 843,924 - PP_0726 0.56 +0.3 843,924 - PP_0726 0.56 +1.2 843,924 - PP_0726 0.56 -0.2 843,924 - PP_0726 0.56 +2.4 843,951 + PP_0726 0.60 +1.7 843,951 + PP_0726 0.60 -0.7 843,951 + PP_0726 0.60 +1.3 843,952 - PP_0726 0.60 -0.0 843,955 + PP_0726 0.60 -0.2 843,955 + PP_0726 0.60 -0.7 843,955 + PP_0726 0.60 +0.3 843,955 + PP_0726 0.60 +0.8 843,955 + PP_0726 0.60 +1.1 843,956 - PP_0726 0.60 -0.1 843,956 - PP_0726 0.60 +1.0 843,956 - PP_0726 0.60 -1.4 843,998 + PP_0726 0.66 +1.2 843,998 + PP_0726 0.66 -0.8 844,039 - PP_0726 0.72 +0.6 844,142 + PP_0726 0.86 +0.6 844,143 - PP_0726 0.86 -0.9 844,143 - PP_0726 0.86 +1.0 844,159 + PP_0726 0.88 +0.2 844,159 + PP_0726 0.88 +0.4 844,166 + PP_0726 0.89 -0.2 844,167 - PP_0726 0.89 -1.9 844,202 + -0.6 844,202 + +0.6 844,298 - -3.4 844,329 + PP_0727 0.15 +1.7 844,349 + PP_0727 0.18 -1.4 844,350 - PP_0727 0.18 +2.3 844,350 - PP_0727 0.18 +2.9 844,350 - PP_0727 0.18 +0.9 844,384 + PP_0727 0.24 -0.5 844,385 - PP_0727 0.24 +0.7 844,387 + PP_0727 0.24 +0.1 844,388 - PP_0727 0.25 +0.6 844,388 - PP_0727 0.25 +1.0 844,422 - PP_0727 0.30 +0.6 844,431 - PP_0727 0.32 -0.7 844,431 - PP_0727 0.32 +0.7 844,480 + PP_0727 0.40 +1.1 844,480 + PP_0727 0.40 -0.6 844,480 + PP_0727 0.40 -0.1 844,481 - -1.2 844,481 - PP_0727 0.40 +1.8 844,481 - PP_0727 0.40 +0.5 844,481 - PP_0727 0.40 +0.8 844,481 - PP_0727 0.40 +2.3 844,481 - PP_0727 0.40 +1.1 844,528 + PP_0727 0.48 +0.3 844,528 + PP_0727 0.48 +0.2 844,529 - PP_0727 0.48 -0.2 844,547 - PP_0727 0.51 +1.5 844,547 - PP_0727 0.51 -1.4 844,657 - PP_0727 0.69 -0.6 844,691 - PP_0727 0.75 -0.3 844,725 - PP_0727 0.80 -0.9 844,751 - PP_0727 0.85 -0.2 844,751 - PP_0727 0.85 -0.7 844,855 - -2.1 844,855 - +2.3 844,855 - -0.1 844,856 + -0.8 844,899 + -0.5 844,900 - +0.2 844,931 + +2.0 844,970 + PP_0728 0.11 -0.7 844,970 + PP_0728 0.11 +1.5 844,970 + PP_0728 0.11 -0.1 844,970 + PP_0728 0.11 -0.7 844,971 - PP_0728 0.11 -3.0 844,971 - PP_0728 0.11 -0.4 844,971 - PP_0728 0.11 +1.3 844,971 - PP_0728 0.11 +0.2 845,076 + PP_0728 0.20 -0.8 845,077 - PP_0728 0.20 +1.4 845,077 - PP_0728 0.20 -0.1 845,179 - PP_0728 0.29 -0.1 845,217 + PP_0728 0.32 +1.3 845,349 + PP_0728 0.44 -0.2 845,349 + PP_0728 0.44 -0.4 845,350 - PP_0728 0.44 -0.9 845,350 - PP_0728 0.44 +0.7 845,367 + PP_0728 0.45 -0.1 845,368 - PP_0728 0.45 +0.7 845,401 + PP_0728 0.48 +1.8 845,402 - PP_0728 0.48 +2.6 845,402 - PP_0728 0.48 -0.3 845,402 - PP_0728 0.48 -0.9 845,407 + PP_0728 0.49 +0.8 845,408 - PP_0728 0.49 -1.0 845,408 - PP_0728 0.49 -0.1 845,408 - PP_0728 0.49 -1.4 845,432 + PP_0728 0.51 +0.2 845,475 - PP_0728 0.54 +0.5 845,526 + PP_0728 0.59 +1.6 845,526 + PP_0728 0.59 -0.9 845,526 + PP_0728 0.59 +0.2 845,527 - PP_0728 0.59 +0.7 845,562 + PP_0728 0.62 -1.7 845,563 - PP_0728 0.62 +0.2 845,584 + PP_0728 0.64 +1.4 845,619 + PP_0728 0.67 +0.8 845,619 + PP_0728 0.67 -0.1 845,619 + PP_0728 0.67 +1.2 845,619 + PP_0728 0.67 -1.1 845,619 + PP_0728 0.67 +1.3 845,619 + PP_0728 0.67 -0.2 845,620 - PP_0728 0.67 +0.4 845,620 - PP_0728 0.67 +0.1 845,620 - PP_0728 0.67 +0.5 845,620 - PP_0728 0.67 -0.9 845,620 - PP_0728 0.67 +0.0 845,620 - PP_0728 0.67 +0.1 845,620 - PP_0728 0.67 +1.5 845,626 + PP_0728 0.67 -0.5 845,626 + PP_0728 0.67 +0.9 845,626 + PP_0728 0.67 +0.2 845,626 + PP_0728 0.67 +1.9 845,627 - PP_0728 0.67 +0.3 845,627 - +2.6 845,630 + PP_0728 0.68 -0.3 845,672 + PP_0728 0.71 +0.5 845,673 - PP_0728 0.71 +0.5 845,673 - PP_0728 0.71 -0.3 845,673 - PP_0728 0.71 +2.5 845,714 + PP_0728 0.75 +2.2 845,714 + PP_0728 0.75 -0.3 845,714 + PP_0728 0.75 -2.4 845,715 - PP_0728 0.75 -1.1 845,715 - PP_0728 0.75 +0.1 845,715 - PP_0728 0.75 -1.4 845,715 - PP_0728 0.75 -0.4 845,754 + PP_0728 0.78 -2.4 845,754 + PP_0728 0.78 +1.9 845,754 + PP_0728 0.78 +1.1 845,754 + PP_0728 0.78 -0.3 845,754 + PP_0728 0.78 -0.8 845,755 - PP_0728 0.78 +1.5 845,757 + PP_0728 0.78 +1.2 845,758 - PP_0728 0.79 +0.6 845,784 + PP_0728 0.81 +1.9 845,784 + PP_0728 0.81 +0.4 845,796 + PP_0728 0.82 +0.3 845,796 + PP_0728 0.82 +0.4
Or see this region's nucleotide sequence