Strain Fitness in Pseudomonas putida KT2440 around PP_0707

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0706 and PP_0707 are separated by 56 nucleotidesPP_0707 and PP_0708 are separated by 131 nucleotides PP_0706: PP_0706 - fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator, at 819,521 to 820,573 _0706 PP_0707: PP_0707 - putative membrane protein, at 820,630 to 823,041 _0707 PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603 _0708 Position (kb) 820 821 822 823 824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 819.661 kb on + strand, within PP_0706at 819.662 kb on - strand, within PP_0706at 819.677 kb on + strand, within PP_0706at 819.730 kb on + strand, within PP_0706at 819.731 kb on - strand, within PP_0706at 819.973 kb on + strand, within PP_0706at 819.973 kb on + strand, within PP_0706at 819.973 kb on + strand, within PP_0706at 819.974 kb on - strand, within PP_0706at 819.974 kb on - strand, within PP_0706at 819.990 kb on - strand, within PP_0706at 820.010 kb on + strand, within PP_0706at 820.010 kb on + strand, within PP_0706at 820.011 kb on - strand, within PP_0706at 820.011 kb on - strand, within PP_0706at 820.116 kb on + strand, within PP_0706at 820.117 kb on - strand, within PP_0706at 820.117 kb on - strand, within PP_0706at 820.239 kb on - strand, within PP_0706at 820.382 kb on + strand, within PP_0706at 820.383 kb on - strand, within PP_0706at 820.383 kb on - strand, within PP_0706at 820.456 kb on + strand, within PP_0706at 820.457 kb on - strand, within PP_0706at 820.457 kb on - strand, within PP_0706at 820.625 kb on - strandat 821.037 kb on - strand, within PP_0707at 821.204 kb on + strand, within PP_0707at 821.324 kb on + strand, within PP_0707at 821.325 kb on - strand, within PP_0707at 821.527 kb on - strand, within PP_0707at 821.908 kb on + strand, within PP_0707at 821.924 kb on - strand, within PP_0707at 821.974 kb on + strand, within PP_0707at 821.974 kb on + strand, within PP_0707at 821.975 kb on + strand, within PP_0707at 821.975 kb on - strand, within PP_0707at 822.098 kb on + strand, within PP_0707at 822.098 kb on + strand, within PP_0707at 822.099 kb on - strandat 822.099 kb on - strand, within PP_0707at 822.099 kb on - strand, within PP_0707at 822.099 kb on - strand, within PP_0707at 822.099 kb on - strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.439 kb on - strand, within PP_0707at 822.601 kb on - strand, within PP_0707at 822.735 kb on + strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.797 kb on - strand, within PP_0707at 822.889 kb on + strandat 822.889 kb on + strandat 822.890 kb on - strandat 822.890 kb on - strandat 823.039 kb on + strandat 823.191 kb on + strandat 823.191 kb on + strandat 823.210 kb on + strandat 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.376 kb on + strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.505 kb on + strand, within PP_0708at 823.507 kb on + strand, within PP_0708at 823.507 kb on + strandat 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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819,661 + PP_0706 0.13 -0.8
819,662 - PP_0706 0.13 +0.8
819,677 + PP_0706 0.15 -0.7
819,730 + PP_0706 0.20 +1.8
819,731 - PP_0706 0.20 -0.4
819,973 + PP_0706 0.43 +0.2
819,973 + PP_0706 0.43 -1.3
819,973 + PP_0706 0.43 -0.4
819,974 - PP_0706 0.43 +1.8
819,974 - PP_0706 0.43 -1.5
819,990 - PP_0706 0.45 -0.2
820,010 + PP_0706 0.46 +0.5
820,010 + PP_0706 0.46 -0.1
820,011 - PP_0706 0.47 -0.0
820,011 - PP_0706 0.47 +0.6
820,116 + PP_0706 0.57 -0.5
820,117 - PP_0706 0.57 +0.1
820,117 - PP_0706 0.57 -1.8
820,239 - PP_0706 0.68 -0.2
820,382 + PP_0706 0.82 -1.9
820,383 - PP_0706 0.82 +0.2
820,383 - PP_0706 0.82 -1.0
820,456 + PP_0706 0.89 +3.0
820,457 - PP_0706 0.89 +0.7
820,457 - PP_0706 0.89 +0.6
820,625 - -2.0
821,037 - PP_0707 0.17 -1.5
821,204 + PP_0707 0.24 -2.2
821,324 + PP_0707 0.29 -1.0
821,325 - PP_0707 0.29 -2.8
821,527 - PP_0707 0.37 +0.8
821,908 + PP_0707 0.53 -2.1
821,924 - PP_0707 0.54 -0.1
821,974 + PP_0707 0.56 -0.3
821,974 + PP_0707 0.56 -1.1
821,975 + PP_0707 0.56 -3.6
821,975 - PP_0707 0.56 -2.6
822,098 + PP_0707 0.61 -2.0
822,098 + PP_0707 0.61 -0.5
822,099 - -1.8
822,099 - PP_0707 0.61 -3.1
822,099 - PP_0707 0.61 -2.2
822,099 - PP_0707 0.61 +0.1
822,099 - PP_0707 0.61 -0.8
822,438 + PP_0707 0.75 -2.7
822,438 + PP_0707 0.75 -0.2
822,438 + PP_0707 0.75 -2.6
822,438 + PP_0707 0.75 -1.6
822,439 - PP_0707 0.75 -1.7
822,601 - PP_0707 0.82 -1.3
822,735 + PP_0707 0.87 -4.0
822,736 - PP_0707 0.87 -2.6
822,736 - PP_0707 0.87 +1.6
822,736 - PP_0707 0.87 -1.6
822,736 - PP_0707 0.87 -3.5
822,736 - PP_0707 0.87 -1.2
822,797 - PP_0707 0.90 -1.6
822,889 + -2.3
822,889 + -0.3
822,890 - -0.4
822,890 - -0.5
823,039 + -1.1
823,191 + +1.6
823,191 + +0.2
823,210 + -1.1
823,371 + PP_0708 0.14 -0.8
823,371 + PP_0708 0.14 +0.9
823,371 + PP_0708 0.14 -0.4
823,371 + PP_0708 0.14 +0.9
823,372 - PP_0708 0.14 +1.2
823,372 - PP_0708 0.14 -0.3
823,372 - PP_0708 0.14 +0.1
823,372 - PP_0708 0.14 -0.3
823,372 - PP_0708 0.14 +1.1
823,376 + PP_0708 0.14 +0.1
823,377 - PP_0708 0.14 +0.7
823,377 - PP_0708 0.14 +1.2
823,377 - PP_0708 0.14 -2.3
823,505 + PP_0708 0.23 +0.5
823,507 + PP_0708 0.23 -1.8
823,507 + +1.5
823,508 - PP_0708 0.23 -0.5
823,508 - PP_0708 0.23 +0.3
823,508 - PP_0708 0.23 -2.3
823,597 + PP_0708 0.30 -0.0
823,597 + PP_0708 0.30 +0.8
823,597 + PP_0708 0.30 +2.1
823,598 - PP_0708 0.30 +1.0
823,598 - PP_0708 0.30 -0.1
823,598 - PP_0708 0.30 -0.3

Or see this region's nucleotide sequence