Strain Fitness in Pseudomonas putida KT2440 around PP_0679

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
792,279	+		PP_0678	0.58	+0.6
792,280	-		PP_0678	0.59	-0.3
792,349	+		PP_0678	0.62	+0.8
792,350	-		PP_0678	0.62	-1.4
792,417	+		PP_0678	0.66	+0.3
792,417	+		PP_0678	0.66	+2.1
792,492	+		PP_0678	0.70	+1.6
792,518	+		PP_0678	0.71	+1.7
792,522	+		PP_0678	0.72	-0.3
792,523	-				+2.9
792,523	-		PP_0678	0.72	+0.1
792,523	-		PP_0678	0.72	+1.8
792,523	-		PP_0678	0.72	+0.8
792,543	+		PP_0678	0.73	+1.1
792,543	+		PP_0678	0.73	+1.3
792,544	-		PP_0678	0.73	-0.3
792,544	-		PP_0678	0.73	-1.1
792,633	+		PP_0678	0.78	+1.5
792,633	+		PP_0678	0.78	-0.7
792,633	+		PP_0678	0.78	+0.3
792,767	+		PP_0678	0.85	+1.5
792,768	-		PP_0678	0.85	-0.8
792,768	-		PP_0678	0.85	-1.2
792,807	+		PP_0678	0.87	+0.6
792,807	+		PP_0678	0.87	+0.3
792,807	+		PP_0678	0.87	+0.5
792,808	-				+1.3
792,808	-		PP_0678	0.87	+2.5
792,808	-		PP_0678	0.87	+0.3
792,891	+				+2.0
792,891	+				+2.2
792,891	+				-0.4
792,891	+				+4.0
792,892	-				+1.6
792,892	-				-0.2
792,924	+				+0.8
792,924	+				+0.5
792,925	-				+3.1
792,925	-				+1.3
793,059	+				+0.5
793,060	-				+0.8
793,121	+				+1.6
793,121	+				+1.3
793,121	+				+0.3
793,121	+				+0.1
793,122	-				+1.0
793,132	-				+0.8
793,136	+				+1.3
793,136	+				+0.7
793,136	+				+1.8
793,137	-				+0.1
793,137	-				+1.0
793,137	-				+0.6
793,137	-				+0.4
793,137	-				-0.2
793,257	-		PP_0679	0.27	+0.2
793,257	-		PP_0679	0.27	+0.0
793,276	+		PP_0679	0.30	+0.4
793,295	+		PP_0679	0.34	+1.2
793,295	+		PP_0679	0.34	+0.8
793,295	+		PP_0679	0.34	+0.7
793,295	+		PP_0679	0.34	-0.0
793,296	-		PP_0679	0.34	+0.9
793,296	-		PP_0679	0.34	-0.0
793,296	-		PP_0679	0.34	+1.7
793,296	-		PP_0679	0.34	+2.6
793,296	-		PP_0679	0.34	+1.9
793,385	+		PP_0679	0.51	+3.2
793,386	-		PP_0679	0.52	+2.3
793,467	+		PP_0679	0.67	-0.6
793,608	+				+0.5
793,608	+				+1.1
793,609	-				+1.6
793,609	-				+1.5
793,777	+				+0.7
793,777	+				+2.6
793,777	+				-0.3
793,777	+				-0.2
793,778	-				+0.9
793,778	-				-1.4
793,778	-				-1.4
793,830	+				+0.9
793,831	-				-1.1
793,831	-				-1.1
793,847	+				-1.1
793,847	+				+1.8
793,939	+				-0.3
794,037	-				+1.3
794,045	+				+0.9
794,045	+				+0.7
794,045	+				+0.2
794,046	-				+0.6
794,046	-				+0.2
794,046	-				+0.4
794,142	-		PP_0680	0.12	-0.7
794,142	-		PP_0680	0.12	-0.6
794,282	+		PP_0680	0.17	-2.3
794,327	+		PP_0680	0.19	-1.1
794,328	-		PP_0680	0.19	+1.4
794,328	-		PP_0680	0.19	-1.1
794,328	-		PP_0680	0.19	-0.5
794,328	-		PP_0680	0.19	-1.0
794,328	-		PP_0680	0.19	-0.1
794,384	+		PP_0680	0.22	+0.6