Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0575 and PP_0576 are separated by 305 nucleotides PP_0576 and PP_0577 are separated by 19 nucleotides PP_0577 and PP_0578 overlap by 38 nucleotides PP_0578 and PP_0579 overlap by 4 nucleotides
PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108
_0575
PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983
_0576
PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698
_0577
PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410
_0578
PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805
_0579
Position (kb) 675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 674.041 kb on - strand, within PP_0575 at 674.176 kb on - strand at 674.176 kb on - strand at 674.282 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.298 kb on - strand at 674.364 kb on + strand at 674.416 kb on - strand at 674.436 kb on + strand at 674.436 kb on + strand at 674.437 kb on - strand at 674.461 kb on + strand at 674.462 kb on - strand at 674.502 kb on + strand, within PP_0576 at 674.537 kb on + strand, within PP_0576 at 674.538 kb on - strand, within PP_0576 at 674.592 kb on + strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.617 kb on - strand, within PP_0576 at 674.668 kb on - strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.717 kb on + strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.748 kb on - strand, within PP_0576 at 674.875 kb on + strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.880 kb on + strand, within PP_0576 at 674.963 kb on + strand at 674.964 kb on - strand at 674.964 kb on - strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.002 kb on - strand at 675.002 kb on - strand at 675.005 kb on - strand at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.173 kb on - strand, within PP_0577 at 675.176 kb on + strand, within PP_0577 at 675.177 kb on - strand, within PP_0577 at 675.199 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.272 kb on - strand, within PP_0577 at 675.280 kb on + strand, within PP_0577 at 675.317 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.631 kb on + strand at 675.631 kb on + strand at 675.640 kb on + strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 676.358 kb on + strand at 676.358 kb on + strand at 676.359 kb on - strand at 676.359 kb on - strand at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 674,041 - PP_0575 0.86 +0.6 674,176 - +0.1 674,176 - -0.4 674,282 + +1.1 674,293 + -0.5 674,293 + +0.4 674,293 + +0.3 674,293 + -0.6 674,293 + -0.4 674,293 + +0.3 674,294 - +0.6 674,294 - +0.6 674,294 - +0.2 674,294 - +1.0 674,294 - +1.2 674,294 - +1.2 674,294 - +0.5 674,294 - +0.4 674,294 - -0.6 674,297 + -1.6 674,297 + -1.4 674,297 + -2.8 674,297 + -1.5 674,298 - -1.5 674,364 + +1.1 674,416 - +0.2 674,436 + +0.3 674,436 + -0.3 674,437 - -1.6 674,461 + +1.4 674,462 - +0.5 674,502 + PP_0576 0.15 -1.6 674,537 + PP_0576 0.22 -0.8 674,538 - PP_0576 0.22 +0.8 674,592 + PP_0576 0.31 -0.3 674,593 - PP_0576 0.31 -0.2 674,593 - PP_0576 0.31 +0.2 674,593 - PP_0576 0.31 +0.7 674,616 + PP_0576 0.35 -1.7 674,616 + PP_0576 0.35 +1.1 674,616 + PP_0576 0.35 +1.3 674,616 + PP_0576 0.35 +0.5 674,617 - PP_0576 0.36 +0.8 674,668 - PP_0576 0.45 +0.2 674,709 + PP_0576 0.52 +0.5 674,709 + PP_0576 0.52 -1.7 674,709 + PP_0576 0.52 -1.5 674,709 + PP_0576 0.52 +1.0 674,709 + PP_0576 0.52 -0.2 674,710 - PP_0576 0.52 -0.3 674,710 - PP_0576 0.52 -1.0 674,710 - PP_0576 0.52 +2.2 674,710 - PP_0576 0.52 +0.6 674,710 - PP_0576 0.52 +0.8 674,710 - PP_0576 0.52 -2.4 674,710 - PP_0576 0.52 -0.1 674,717 + PP_0576 0.53 -0.0 674,718 - PP_0576 0.53 +1.4 674,718 - PP_0576 0.53 -0.1 674,718 - PP_0576 0.53 +1.7 674,718 - PP_0576 0.53 -0.2 674,748 - PP_0576 0.59 +0.1 674,875 + PP_0576 0.81 +0.5 674,876 - PP_0576 0.81 +0.1 674,876 - PP_0576 0.81 +0.7 674,876 - PP_0576 0.81 +0.0 674,880 + PP_0576 0.82 +0.9 674,963 + -0.5 674,964 - -0.2 674,964 - +0.5 675,001 + -0.9 675,001 + +0.7 675,001 + -0.6 675,001 + +0.4 675,002 - +0.2 675,002 - +0.5 675,005 - -3.5 675,137 - PP_0577 0.19 -1.5 675,137 - PP_0577 0.19 -1.4 675,137 - PP_0577 0.19 -1.1 675,137 - PP_0577 0.19 -2.2 675,172 + PP_0577 0.24 +2.2 675,172 + PP_0577 0.24 +0.0 675,172 + PP_0577 0.24 +0.7 675,173 - PP_0577 0.24 -0.1 675,176 + PP_0577 0.25 -0.9 675,177 - PP_0577 0.25 -2.5 675,199 + PP_0577 0.28 -1.1 675,259 + PP_0577 0.37 -0.2 675,259 + PP_0577 0.37 -0.1 675,263 - PP_0577 0.37 -2.9 675,263 - PP_0577 0.37 +0.1 675,263 - PP_0577 0.37 -2.2 675,263 - PP_0577 0.37 -1.7 675,271 + PP_0577 0.39 +0.9 675,271 + PP_0577 0.39 -0.8 675,271 + PP_0577 0.39 -0.2 675,272 - PP_0577 0.39 -1.3 675,280 + PP_0577 0.40 -0.2 675,317 + PP_0577 0.45 -0.5 675,499 + PP_0577 0.71 -0.8 675,499 + PP_0577 0.71 +0.2 675,569 - PP_0577 0.81 +1.3 675,569 - PP_0577 0.81 +0.3 675,569 - PP_0577 0.81 -1.2 675,569 - PP_0577 0.81 -0.4 675,569 - PP_0577 0.81 -0.6 675,631 + +0.6 675,631 + +0.6 675,640 + +4.4 675,641 - +1.8 675,641 - -0.1 675,641 - -0.2 675,641 - +0.8 675,641 - -1.1 675,641 - +1.0 675,786 + PP_0578 0.17 +0.4 675,786 + PP_0578 0.17 +0.4 675,786 + PP_0578 0.17 +0.9 675,786 + PP_0578 0.17 -1.2 675,786 + PP_0578 0.17 -0.5 675,786 + PP_0578 0.17 +0.1 675,786 + PP_0578 0.17 -0.6 675,787 - PP_0578 0.17 -1.5 675,787 - PP_0578 0.17 -1.4 675,787 - PP_0578 0.17 -2.1 675,788 + PP_0578 0.17 +0.4 675,788 + PP_0578 0.17 +0.2 675,788 + PP_0578 0.17 -0.9 675,788 + PP_0578 0.17 +0.1 675,789 - PP_0578 0.17 -2.1 675,789 - PP_0578 0.17 +1.1 675,834 + PP_0578 0.23 -0.5 675,834 + PP_0578 0.23 +1.8 675,834 + PP_0578 0.23 +1.9 675,835 - PP_0578 0.23 +0.2 675,835 - PP_0578 0.23 -2.5 675,835 - PP_0578 0.23 -1.2 675,977 + PP_0578 0.42 -0.8 675,977 + PP_0578 0.42 -0.4 676,358 + -0.4 676,358 + +2.5 676,359 - +1.3 676,359 - +0.3 676,498 + PP_0579 0.23 -0.2 676,498 + PP_0579 0.23 -0.7 676,498 + PP_0579 0.23 -1.7
Or see this region's nucleotide sequence