Strain Fitness in Pseudomonas putida KT2440 around PP_0563

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
654,272	+		PP_0562	0.76	+1.5
654,272	+		PP_0562	0.76	+0.3
654,273	-		PP_0562	0.76	-2.3
654,273	-		PP_0562	0.76	+1.0
654,273	-		PP_0562	0.76	-0.2
654,289	-		PP_0562	0.77	-1.0
654,324	+		PP_0562	0.79	-1.6
654,325	-		PP_0562	0.79	-1.3
654,564	+				-0.5
654,565	-				-0.5
654,565	-				-0.8
654,575	-				+0.7
654,618	+				+0.8
654,619	-				+3.1
654,742	+				-0.2
654,772	+				-0.0
654,772	+				-0.0
654,773	-				+0.2
654,773	-				+0.5
654,908	+				-1.0
654,908	+				+0.1
654,909	-				-1.2
654,925	+				-0.1
654,926	-				-1.9
654,926	-				+0.7
654,926	-				+1.8
654,997	-				-2.5
655,145	-		PP_0563	0.12	+1.3
655,436	+		PP_0563	0.33	-0.8
655,437	-		PP_0563	0.33	-0.5
655,450	+		PP_0563	0.34	+1.3
655,451	-		PP_0563	0.34	-0.0
655,523	+		PP_0563	0.40	+0.3
655,523	+		PP_0563	0.40	+0.1
655,624	+		PP_0563	0.47	+0.0
655,625	-		PP_0563	0.47	+3.0
655,625	-		PP_0563	0.47	+0.2
655,625	-		PP_0563	0.47	+0.6
655,645	+		PP_0563	0.49	-0.2
655,645	+		PP_0563	0.49	+0.2
655,645	+		PP_0563	0.49	+0.0
655,646	-		PP_0563	0.49	+1.7
655,646	-		PP_0563	0.49	-0.6
655,666	-		PP_0563	0.50	-1.1
655,702	+		PP_0563	0.53	+1.9
655,703	-		PP_0563	0.53	+2.6
655,703	-		PP_0563	0.53	-0.3
655,703	-		PP_0563	0.53	+2.4
655,703	-		PP_0563	0.53	+1.8
655,703	-		PP_0563	0.53	+0.1
655,803	+		PP_0563	0.60	-0.0
655,816	+		PP_0563	0.61	-0.2
655,817	-		PP_0563	0.61	+2.3
655,817	-		PP_0563	0.61	+0.8
655,817	-		PP_0563	0.61	+4.1
655,817	-		PP_0563	0.61	+0.5
656,110	+		PP_0563	0.83	-0.6
656,227	+				-2.5
656,227	+				-0.8
656,227	+				-0.9
656,228	-				+0.4
656,228	-				+0.2
656,352	-				+0.3
656,355	+				-0.1
656,355	+				-0.5
656,355	+				+0.3
656,356	-				-0.3
656,356	-				-2.0
656,356	-				+0.2
656,357	+				+1.0
656,358	-				+1.3
656,358	-				+1.3
656,358	-				-0.7
656,477	+				-1.0
656,484	-				-0.0
656,500	+				+1.1
656,501	-				+0.8
656,501	-				+0.4
656,502	+				+1.7
656,502	+				-0.8
656,502	+				-0.2
656,503	-				+1.0
656,668	+				-0.5
656,668	+				+1.0
656,669	-				-0.1
656,808	+		PP_0564	0.22	+0.8
656,808	+		PP_0564	0.22	+0.9
656,809	-		PP_0564	0.22	+1.9
656,833	+		PP_0564	0.24	+0.0
656,833	+		PP_0564	0.24	-1.2
656,834	-		PP_0564	0.24	+0.6
656,835	+		PP_0564	0.24	+0.0
656,835	+		PP_0564	0.24	+0.8
656,835	+		PP_0564	0.24	+1.6
656,835	+		PP_0564	0.24	-0.7
656,835	+		PP_0564	0.24	-1.2
656,836	-		PP_0564	0.25	+0.7
656,836	-		PP_0564	0.25	-0.2
656,836	-		PP_0564	0.25	+1.6
656,836	-		PP_0564	0.25	-2.4
656,836	-		PP_0564	0.25	-0.7
656,953	+		PP_0564	0.35	+0.6
656,954	-		PP_0564	0.35	-1.3
656,997	+		PP_0564	0.39	-0.6
657,177	+		PP_0564	0.56	-1.7
657,178	-		PP_0564	0.56	-0.1
657,184	+		PP_0564	0.56	-0.8
657,185	-		PP_0564	0.57	+0.4
657,187	-		PP_0564	0.57	+1.2