Strain Fitness in Pseudomonas putida KT2440 around PP_0553

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0552 and PP_0553 are separated by 28 nucleotidesPP_0553 and PP_0554 overlap by 4 nucleotides PP_0552: PP_0552 - 2,3-butanediol dehydrogenase, at 640,763 to 641,851 _0552 PP_0553: PP_0553 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 641,880 to 642,986 _0553 PP_0554: PP_0554 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta, at 642,983 to 644,005 _0554 Position (kb) 641 642 643Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 640.935 kb on + strandat 640.936 kb on - strand, within PP_0552at 641.011 kb on + strand, within PP_0552at 641.069 kb on - strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.407 kb on - strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.494 kb on - strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.512 kb on - strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.522 kb on - strand, within PP_0552at 641.568 kb on + strand, within PP_0552at 641.666 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.778 kb on - strandat 641.778 kb on - strandat 641.794 kb on + strandat 641.881 kb on + strandat 641.881 kb on + strandat 641.882 kb on - strandat 641.882 kb on - strandat 641.970 kb on + strandat 641.971 kb on - strandat 642.262 kb on + strand, within PP_0553at 642.263 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.712 kb on - strand, within PP_0553at 642.712 kb on - strand, within PP_0553at 642.962 kb on + strandat 642.963 kb on - strandat 642.963 kb on - strandat 642.972 kb on - strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.091 kb on - strand, within PP_0554at 643.350 kb on + strand, within PP_0554at 643.351 kb on - strand, within PP_0554at 643.355 kb on - strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.447 kb on - strand, within PP_0554at 643.521 kb on + strand, within PP_0554at 643.522 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.669 kb on - strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.840 kb on - strand, within PP_0554at 643.931 kb on + strandat 643.931 kb on + strandat 643.931 kb on + strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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640,935 + +1.9
640,936 - PP_0552 0.16 +1.1
641,011 + PP_0552 0.23 +1.0
641,069 - PP_0552 0.28 -0.1
641,297 + PP_0552 0.49 +0.2
641,297 + PP_0552 0.49 -0.2
641,298 - PP_0552 0.49 +0.8
641,298 - PP_0552 0.49 +0.6
641,407 - PP_0552 0.59 -0.3
641,493 + PP_0552 0.67 +1.3
641,493 + PP_0552 0.67 -0.2
641,493 + PP_0552 0.67 -1.3
641,493 + PP_0552 0.67 +0.3
641,493 + PP_0552 0.67 -0.7
641,494 - PP_0552 0.67 +0.4
641,511 + PP_0552 0.69 +2.9
641,511 + PP_0552 0.69 -1.2
641,511 + PP_0552 0.69 -0.2
641,512 - PP_0552 0.69 -0.7
641,514 + PP_0552 0.69 -0.3
641,514 + PP_0552 0.69 +0.0
641,514 + PP_0552 0.69 -0.3
641,514 + PP_0552 0.69 +1.3
641,514 + PP_0552 0.69 -0.5
641,514 + PP_0552 0.69 +0.5
641,514 + PP_0552 0.69 -1.9
641,515 - PP_0552 0.69 -0.5
641,515 - PP_0552 0.69 +0.3
641,522 - PP_0552 0.70 -0.7
641,568 + PP_0552 0.74 -1.4
641,666 + PP_0552 0.83 +0.4
641,694 + PP_0552 0.85 -1.3
641,694 + PP_0552 0.85 +2.9
641,694 + PP_0552 0.85 +0.1
641,695 - PP_0552 0.86 +0.1
641,695 - PP_0552 0.86 -0.3
641,695 - PP_0552 0.86 -0.0
641,695 - PP_0552 0.86 -0.4
641,778 - -0.3
641,778 - -0.3
641,794 + +0.0
641,881 + +0.6
641,881 + -0.9
641,882 - -0.0
641,882 - +1.0
641,970 + -0.4
641,971 - -0.2
642,262 + PP_0553 0.35 -0.6
642,263 - PP_0553 0.35 +1.4
642,634 - PP_0553 0.68 -1.2
642,634 - PP_0553 0.68 +0.2
642,711 + PP_0553 0.75 -1.0
642,711 + PP_0553 0.75 +0.8
642,711 + PP_0553 0.75 +0.2
642,712 - PP_0553 0.75 -0.6
642,712 - PP_0553 0.75 -0.3
642,962 + -0.2
642,963 - +2.0
642,963 - +0.2
642,972 - -0.6
643,053 + +0.3
643,053 + +0.7
643,053 + +3.2
643,053 + -0.4
643,053 + -0.3
643,053 + -0.9
643,053 + -3.3
643,053 + +0.2
643,053 + -1.4
643,054 - +0.2
643,054 - -0.4
643,054 - +0.1
643,091 - PP_0554 0.11 +1.1
643,350 + PP_0554 0.36 -0.0
643,351 - PP_0554 0.36 +1.4
643,355 - PP_0554 0.36 +0.1
643,413 + PP_0554 0.42 -0.0
643,413 + PP_0554 0.42 -0.9
643,414 - PP_0554 0.42 -1.2
643,414 - PP_0554 0.42 -0.9
643,414 - PP_0554 0.42 -0.6
643,414 - PP_0554 0.42 -0.0
643,414 - PP_0554 0.42 +0.5
643,446 + PP_0554 0.45 -2.1
643,446 + PP_0554 0.45 +0.9
643,446 + PP_0554 0.45 +1.3
643,447 - PP_0554 0.45 -0.7
643,521 + PP_0554 0.53 +0.6
643,522 - PP_0554 0.53 -1.1
643,621 - PP_0554 0.62 +0.2
643,621 - PP_0554 0.62 +1.8
643,621 - PP_0554 0.62 -0.9
643,621 - PP_0554 0.62 +0.0
643,621 - PP_0554 0.62 -0.4
643,621 - PP_0554 0.62 +0.2
643,621 - PP_0554 0.62 +1.4
643,668 + PP_0554 0.67 +0.3
643,668 + PP_0554 0.67 -0.3
643,669 - PP_0554 0.67 +0.1
643,839 + PP_0554 0.84 -0.8
643,839 + PP_0554 0.84 +1.0
643,840 - PP_0554 0.84 -0.0
643,931 + +0.7
643,931 + -0.1
643,931 + +0.6
643,932 - +0.3
643,932 - +0.9
643,932 - -0.0
643,932 - +0.3

Or see this region's nucleotide sequence